Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20112
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    23   2.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.9  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.5  

>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 278 LQIKCPFYVWSIIQQCPIVRWPR 346
           LQ+    +V S I   P+ RWP+
Sbjct: 1   LQVDMQLFVLSPIILIPLFRWPK 23


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 512 PGGKLHSRRGVNQPNNNSLKWHLKSHFRI*LTKMNS 619
           PG KL     ++ PN N LK +    + + + K +S
Sbjct: 134 PGIKLSINIILSDPNTNKLKLNTNESYELTVLKSDS 169


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 254  PRTRPSSLQAYLAFRGLELSSNSHILSLSTHS 159
            PRTR        A + +E+SSNS  L LS  S
Sbjct: 1484 PRTRGEKPIVPSAEKFIEVSSNSITLHLSAWS 1515


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = +2

Query: 401 NWTFLSRKGHIRLKMKSISRSTTRRG 478
           +W +   + HI   +KS S    + G
Sbjct: 83  DWVYYESRAHIHCSVKSESSQAAKYG 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,717
Number of Sequences: 336
Number of extensions: 3406
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)