Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20112
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    89   6e-19
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    30   0.24 
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.42 
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     27   1.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   3.9  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.2  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   6.8  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   6.8  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   9.0  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   9.0  

>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 36/70 (51%), Positives = 51/70 (72%)
 Frame = +1

Query: 298 LRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQINDKER 477
           + V   PT+PHCS+ TLIGLCIR+++ R +     +D+ +KKG H +E ++NKQ+NDKER
Sbjct: 98  ITVHITPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASESQVNKQLNDKER 157

Query: 478 IAAAMENPNL 507
           +AAA EN  L
Sbjct: 158 VAAACENEQL 167



 Score = 30.7 bits (66), Expect = 0.18
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +2

Query: 173 ETIYDYLRTIRDPEKPNTLEDLKVVYEEE 259
           + IYD L  I DPE P TL  L VV  E+
Sbjct: 57  QEIYDLLAKINDPEHPLTLAQLSVVKLED 85


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 451 NKQIND-KERIAAAMENPNLKTWWKTA*PKRSKSTQQQFSKMAPEVAFSNITDK 609
           N +++D  E   A +E   L+   K    ++ K   Q F K  PE+ FSN+ D+
Sbjct: 112 NSKLSDLDEETRATVEKMMLEQSQKRTDEQKRKDVLQNFMKQHPELDFSNVRDQ 165


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 605 SVIFENATSGAILENCCWVDLLLFGYAVFHQV 510
           S I+   TSG  L    WV L LFG+A F +V
Sbjct: 215 SDIWNEYTSGNWLMAFIWVGLFLFGFACFREV 246


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 161 NELRETIYDYLRTIRDPEKPNTLE 232
           +EL+ET++DYL  +R   +P  LE
Sbjct: 278 DELKETMWDYLNLVRVYTRPRGLE 301


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 98   VAKPAYMDKSA-TLQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEESL 265
            V  P Y +K   +L+E+  + +   R T+ +YL+ +   E    + D K++ EE++L
Sbjct: 880  VLVPHYGEKILLSLKEIIREQDKLSRVTLLEYLKQLHANEWKCFVRDTKILAEEDAL 936


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 176 TIYDYLRTIRDPEKPNTLEDLKV 244
           +I   +  IRDPE  NT+ED  V
Sbjct: 6   SISSKINRIRDPESDNTIEDTHV 28


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 57  PNYL*TTLQNSQWRSLSPHIWTKVLHY 137
           PNYL + L++  W+ L   I +  +HY
Sbjct: 135 PNYLISILESKNWQLLLEIIGSDAMHY 161


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 149 YKDENELRETIYDYLRTIRDPEKPNTLEDLKVV 247
           +  +NE+ ++IY  L T    E  + +E+L ++
Sbjct: 456 FNQDNEINDSIYKILSTCSTEEWDSAMEELNIL 488


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 86  QPVEVAKPAYMDKSATLQELGYKDENELRETIYDYLR-TIRDPEKPNTLEDLKVVYE 253
           + +E+  P Y        ++   D+    +T+  Y R T+ +P  P+T  DLK + E
Sbjct: 208 EKLEIIHPYYHRICTLFPQMNDWDKVVALKTLVRYARLTLPEPSTPSTHSDLKELLE 264


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 295 VLRVEYNPT--VPHCSLATLIGLCI--RIKILRSIHHPVKLDIFIKKGAHT 435
           VL++E+ PT  V    L  L  +C   ++++LR    PVK  +F+++   T
Sbjct: 273 VLQLEWCPTISVEDSILGFLAVVCSDGKLRVLRVPRSPVKFHVFVEQADFT 323


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 265 VKEPTADKVPVLRVEYNPTVPHCSLATL 348
           V+ P ++K  +    YNP++ +CS A +
Sbjct: 334 VQSPRSEKATIELDNYNPSLENCSSAVI 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,672
Number of Sequences: 5004
Number of extensions: 56098
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)