Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20112
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17381| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   3e-18
SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08)                 42   3e-04
SB_48095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_38239| Best HMM Match : YopE (HMM E-Value=7.2)                      29   2.4  
SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)               27   9.5  
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_24093| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-13)                 27   9.5  
SB_2626| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_17381| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/76 (50%), Positives = 57/76 (75%)
 Frame = +1

Query: 280 ADKVPVLRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQ 459
           +D    ++V++ PT+PHCS+ATLIGL IR+++LRS+    K+D+ I  G H +E  +NKQ
Sbjct: 28  SDDESYVKVQFTPTIPHCSMATLIGLAIRVRLLRSLPDRFKVDVKITPGTHQSEIAVNKQ 87

Query: 460 INDKERIAAAMENPNL 507
           + DKER+AAA+EN +L
Sbjct: 88  LADKERVAAALENNHL 103



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 191 LRTIRDPEKPNTLEDLKVV 247
           +R+I DPE P TLE+L VV
Sbjct: 2   IRSINDPEHPLTLEELNVV 20


>SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08)
          Length = 476

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +1

Query: 280 ADKVPVLRVEYNPTVPHCSLATLIGLCIR 366
           +D    ++V++ PT+PHCS+ATLIGL IR
Sbjct: 448 SDDESYVKVQFTPTIPHCSMATLIGLAIR 476



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +2

Query: 155 DENELRETIYDYLRTIRDPEKPNTLEDLKVV 247
           D+ + RE I+D +R+I DPE P TLE+L VV
Sbjct: 411 DKIDDRE-IFDMIRSINDPEHPLTLEELNVV 440


>SB_48095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 286 YLQLVPSQRFLLVHDLQVFKR-IWLFGVSNCPQIVIYCLSQ 167
           +++ V  + F+L+   ++F+  + LFG ++ P +  YCL Q
Sbjct: 103 FMKKVIDRVFMLIRITEIFRMDVHLFGAASSPAVANYCLHQ 143


>SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 95  EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 229
           EV++ A++  S+T + +  ++ENE +E I D L T  + +  NT+
Sbjct: 553 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 597


>SB_38239| Best HMM Match : YopE (HMM E-Value=7.2)
          Length = 247

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 95  EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 229
           EV++ A++  S+T + +  ++ENE +E I D L T  + +  NT+
Sbjct: 116 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 160


>SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 95  EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 229
           EV++ A++  S+T + +  ++ENE +E I D L T  + +  NT+
Sbjct: 116 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 160


>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 95  EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 229
           EV++ A++  S+T + +  ++ENE +E I D L T  + +  NT+
Sbjct: 526 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 570


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 358  CIRIKILRSIHHPVKLDIFIKKGAHTTEDE 447
            C   K+L  +H P +L  F+  G H ++DE
Sbjct: 1027 CQAWKVLSRVHDPRRLAKFVTDGDHISDDE 1056


>SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)
          Length = 711

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 173 ETIYDYLRTIRDPE 214
           ET+ DYLRTI+DP+
Sbjct: 578 ETLQDYLRTIQDPD 591


>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 172 RDNI*LFEDNSRPRKAKYA*RLE 240
           RDN+ L ED+S+P+K  Y  +LE
Sbjct: 462 RDNVKLAEDSSKPKKNLYKVQLE 484


>SB_24093| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-13)
          Length = 305

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 581 SGAILENCCWVDLLLFGYAVFHQVFRLG 498
           S  +L N C  DLL+  Y +FH +  LG
Sbjct: 56  SNYLLVNLCIADLLVGIYCLFHAILSLG 83


>SB_2626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 581 SGAILENCCWVDLLLFGYAVFHQVFRLG 498
           S  +L N C  DLL+  Y +FH +  LG
Sbjct: 56  SNYLLVNLCIADLLVGIYCLFHAILSLG 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,452,425
Number of Sequences: 59808
Number of extensions: 416104
Number of successful extensions: 1237
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)