Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20112
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-8|CAB07619.1| 160|Caenorhabditis elegans Hypothetical pr... 98 4e-21
U80023-15|AAG24046.1| 343|Caenorhabditis elegans Serpentine rec... 28 4.8
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 28 4.8
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 28 4.8
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 28 4.8
AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine re... 28 4.8
AL032626-28|CAO82072.1| 337|Caenorhabditis elegans Hypothetical... 28 6.3
AL032626-8|CAA21528.1| 335|Caenorhabditis elegans Hypothetical ... 28 6.3
AF068710-3|ABO16459.1| 189|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z93382-8|CAB07619.1| 160|Caenorhabditis elegans Hypothetical
protein F45G2.10 protein.
Length = 160
Score = 98.3 bits (234), Expect = 4e-21
Identities = 41/70 (58%), Positives = 57/70 (81%)
Frame = +1
Query: 298 LRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQINDKER 477
++V + PT+PHCS+ATLIGL IR+K+LRS+H VK+ + I G+H+TE+ IN+Q+ DKER
Sbjct: 79 VKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPGSHSTEESINRQLADKER 138
Query: 478 IAAAMENPNL 507
+AAAMEN L
Sbjct: 139 VAAAMENQGL 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 101 AKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLKVVYEE 256
+KP + + T ++ +D + E I+D +R I DPE P TLE L VV EE
Sbjct: 16 SKPRHRPVTGTERDESVEDPIDSWE-IFDLIRDINDPEHPYTLEQLNVVQEE 66
>U80023-15|AAG24046.1| 343|Caenorhabditis elegans Serpentine
receptor, class h protein200 protein.
Length = 343
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 540 PLRLCSFPPGF*IGILHCSCNPLLVVDLLIDFIFSRM 430
P L FP GF +G+L P ++ L++ IF+ M
Sbjct: 75 PFILAPFPAGFPLGVLRLFGVPTIIQTLMVLIIFAYM 111
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 89 PVEVAKPAYMDKSAT-LQELGYKDENELRETIYDYLRTIRDPEKPN 223
PV VAK AYM+K+ T L + + E + TI P++ N
Sbjct: 334 PVSVAKKAYMNKNITPLHTAAISNSTHMLEAMRAVYPTINIPDQDN 379
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 89 PVEVAKPAYMDKSAT-LQELGYKDENELRETIYDYLRTIRDPEKPN 223
PV VAK AYM+K+ T L + + E + TI P++ N
Sbjct: 334 PVSVAKKAYMNKNITPLHTAAISNSTHMLEAMRAVYPTINIPDQDN 379
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 89 PVEVAKPAYMDKSAT-LQELGYKDENELRETIYDYLRTIRDPEKPN 223
PV VAK AYM+K+ T L + + E + TI P++ N
Sbjct: 334 PVSVAKKAYMNKNITPLHTAAISNSTHMLEAMRAVYPTINIPDQDN 379
>AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine
receptor, class i protein77 protein.
Length = 324
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 268 SQRFLLVHDLQVFKRIWLFGVSNCPQIVIYCLSQLILVFVAELL*CSTFVHIC 110
S+ L++ +V+ + +L SN P V+Y SQ ++F+ L ++F +C
Sbjct: 158 SREDALIYIKKVYPKGYL-QFSNLPNFVVYMKSQNTIIFLVTLFFAASFGFLC 209
>AL032626-28|CAO82072.1| 337|Caenorhabditis elegans Hypothetical
protein Y37D8A.9b protein.
Length = 337
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 158 ENELRETIYDYLRTIR-DPEKPNTLEDLKVVYEEESL*RNQLQIKC 292
E + + I DY++TI E+ T++DL + YEE + L + C
Sbjct: 156 EYSVDQIIEDYIKTIPVSNEQMRTVDDLLIEYEEADIKITNLALIC 201
>AL032626-8|CAA21528.1| 335|Caenorhabditis elegans Hypothetical
protein Y37D8A.9a protein.
Length = 335
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 158 ENELRETIYDYLRTIR-DPEKPNTLEDLKVVYEEESL*RNQLQIKC 292
E + + I DY++TI E+ T++DL + YEE + L + C
Sbjct: 156 EYSVDQIIEDYIKTIPVSNEQMRTVDDLLIEYEEADIKITNLALIC 201
>AF068710-3|ABO16459.1| 189|Caenorhabditis elegans Hypothetical
protein T06A1.4 protein.
Length = 189
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 439 EDEINKQINDKERIAAAMENPNLKTWWKTA*PKRSKSTQQQFSK 570
E E K ++ + I + + LK WWK+ KR +++ FSK
Sbjct: 19 EPEAVKPLDKRIGIDSYRDFFTLKNWWKSVDRKRVEASTYMFSK 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,697,143
Number of Sequences: 27780
Number of extensions: 313235
Number of successful extensions: 888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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