Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20112
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.80 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.80 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.80 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 629 VNFVNSFLSVIFENATSGAILENC 558
           V FVNSFL VI    +SG I   C
Sbjct: 14  VLFVNSFLFVIAAQDSSGRIFTIC 37


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 629 VNFVNSFLSVIFENATSGAILENC 558
           V FVNSFL VI    +SG I   C
Sbjct: 14  VLFVNSFLFVIAAQDSSGRIFTIC 37


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 629 VNFVNSFLSVIFENATSGAILENC 558
           V FVNSFL VI    +SG I   C
Sbjct: 14  VLFVNSFLFVIAAQDSSGRIFTIC 37


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 191 NSHILSLSTHSRLCSRALVM*H 126
           N +ILS S H  +CS   +  H
Sbjct: 361 NGNILSPSIHDNICSNGWICEH 382


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 118 HICGLSDLHW 89
           HI  +SDLHW
Sbjct: 294 HILCMSDLHW 303


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 569 LENCCWVDLLLFGYAVF 519
           L+N  W D LL  Y VF
Sbjct: 37  LDNSVWADGLLVFYEVF 53


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -2

Query: 361 CKVRLAWPANNGALLDY 311
           C ++++W A+   ++DY
Sbjct: 246 CPIKVSWRADGQIMVDY 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,706
Number of Sequences: 438
Number of extensions: 3688
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)