Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20112
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68310.1 68414.m07803 expressed protein contains Pfam profile...   104   6e-23
At3g09380.1 68416.m01113 hypothetical protein contains Pfam prof...    83   2e-16
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ...    32   0.27 
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    29   2.5  
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...    29   3.4  
At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putati...    28   4.4  
At5g46400.1 68418.m05711 expressed protein                             28   5.9  
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    28   5.9  
At5g45410.1 68418.m05580 expressed protein similar to unknown pr...    27   7.8  
At5g41640.1 68418.m05059 expressed protein contains Pfam profile...    27   7.8  

>At1g68310.1 68414.m07803 expressed protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 159

 Score =  104 bits (249), Expect = 6e-23
 Identities = 44/75 (58%), Positives = 60/75 (80%)
 Frame = +1

Query: 283 DKVPVLRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQI 462
           D+   +RV + PTV HCS+AT+IGLC+R+K+LRS+    K+DI +  G+H TED +NKQ+
Sbjct: 73  DENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAPGSHATEDALNKQL 132

Query: 463 NDKERIAAAMENPNL 507
           NDKER+AAA+ENPNL
Sbjct: 133 NDKERVAAALENPNL 147



 Score = 35.5 bits (78), Expect = 0.029
 Identities = 17/28 (60%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
 Frame = +2

Query: 179 IYDYLRT--IRDPEKPNTLEDLKVVYEE 256
           I+D L +  I+DPE PNTLEDL+VV E+
Sbjct: 40  IFDILSSSNIKDPEHPNTLEDLRVVTED 67


>At3g09380.1 68416.m01113 hypothetical protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 156

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 34/75 (45%), Positives = 51/75 (68%)
 Frame = +1

Query: 283 DKVPVLRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQI 462
           D    +R+ + PT+PHC L T IGLCI +K+++S+    K+D+ +  G+H  E  +NKQ+
Sbjct: 71  DHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKVDVRVAPGSHDKETTVNKQL 130

Query: 463 NDKERIAAAMENPNL 507
            DKER+ AA+ENP L
Sbjct: 131 GDKERVTAALENPEL 145


>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
           PF05553: Cotton fiber expressed protein
          Length = 303

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +2

Query: 86  QPVEVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLED 235
           +PV + +P  +      Q+    DE+E  E +++ ++  + P+KPN+L+D
Sbjct: 141 KPVGLRRPPTVPVKTFPQDNTSGDESETMEEMWERVKAEKQPKKPNSLQD 190


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -1

Query: 257 PPRTRPSSLQAYLAFRGLELSSNSHILSLSTHSRLCSRA 141
           PP   PS L   L FR  +        S+S+ SRLCSRA
Sbjct: 72  PPPPPPSPLFTNLPFRICQSQPARFSSSVSSFSRLCSRA 110


>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
 Frame = -1

Query: 296 TGTLSAVGSFTK--IPPRTRPSSLQAYLAFRGLELSSNS--HILSLSTHSRLCSRALVM 132
           T T+ A  S ++  IPP + PS+L++  +FRG+ L++N+   + S+S   +  S+AL +
Sbjct: 4   TNTILAFSSPSRLLIPPSSNPSTLRS--SFRGVSLNNNNLHRLQSVSFAVKAPSKALTV 60


>At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putative
           / NADPH-ferrihemoprotein reductase, putative similar to
           NADPH-ferrihemoprotein reductase NADPH-cytochrome P450
           oxydoreductase isoform 1 [Populus balsamifera subsp.
           trichocarpa x Populus deltoides] GI:13183562, SP|P37116
           NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR)
           [Vigna radiata] {Phaseolus aureus}
          Length = 692

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 385 IHHPVKLDIFIKKGAHTTEDE 447
           IHHP ++D+ ++K  HT E +
Sbjct: 289 IHHPCRVDVAVQKELHTHESD 309


>At5g46400.1 68418.m05711 expressed protein
          Length = 1036

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 262 FVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVKL--DIFIKKGAHT 435
           +V   +AD    + +E N  VPHC L  L+   +R+ ++      V L   I  K+ +H 
Sbjct: 454 YVITNSADDAAQILLEGNENVPHCKL--LLEELMRLLMMHGGSRQVDLLDPIIDKELSHQ 511

Query: 436 TEDEINKQINDKERIA 483
            +        DKE I+
Sbjct: 512 ADSSDGLSAEDKEEIS 527


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +1

Query: 343 TLIGLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQINDKER 477
           +L+G      ++ + H+P+KL+ F+   A   ED++N +++  E+
Sbjct: 18  SLMGQSCERGLVGNRHNPMKLNRFMATSAGEQEDKMNTEVSVSEK 62


>At5g45410.1 68418.m05580 expressed protein similar to unknown
           protein (pir||T05524)
          Length = 342

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 287 KCPFYVWSIIQQCPIVR 337
           +CPF   SIIQ+CP +R
Sbjct: 4   ECPFAAESIIQKCPFLR 20


>At5g41640.1 68418.m05059 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626);
           expression supported by MPSS
          Length = 197

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 227 LEDLKVVYEEESL*RNQLQIKCPFYVWSIIQQCP 328
           L +  +   + SL R ++++  P +VWS I +CP
Sbjct: 138 LNEASMSIMDASLSRVEIRLSNPIWVWSDIYECP 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,002
Number of Sequences: 28952
Number of extensions: 289002
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)