Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20111
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    74   2e-14
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    54   2e-08
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   1.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   1.9  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    27   2.5  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   4.4  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   5.8  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    26   5.8  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   7.7  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    25   7.7  

>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
 Frame = +1

Query: 1   VAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWFFPRWAQALIGTAKICY 177
           V+ A W+KYPN     VI  D ++RKV+D GVL+T RL++     PRW   LI  A+ CY
Sbjct: 17  VSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQALPRWILKLIDGAQDCY 76

Query: 178 ASEISEVNPIQRQMTLKTTNLTF 246
             E S V+   R +TL T+NLTF
Sbjct: 77  IRETSYVDLKARTLTLLTSNLTF 99



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 255 IAVDETVRYTPHPSDSSKTLLKQEAVVTVQGV--PLSSYMEDLLTNKISLNAGKGRQAIE 428
           + VDETV Y+PHP +   T+ +QEA +        LS+ +E    +     A +G++  E
Sbjct: 103 LRVDETVTYSPHP-ELEATVFQQEARIEALACMKRLSNLIEQWSVDGFGKKASRGKEGFE 161

Query: 429 WVIGKFDTEI 458
            V+ K +  +
Sbjct: 162 SVLEKINMSV 171


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
 Frame = +1

Query: 10  AAW-RKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWFFPRWAQALIGTAKICYAS 183
           +AW  +YPNP +  V+  DV+ER V D G L+T RL+  +   PRWA  L+   K  Y  
Sbjct: 20  SAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQGRLPRWASDLLNVNK-SYIL 78

Query: 184 EISEVNPIQRQMTLKTTNL 240
           E S ++P ++++  +T NL
Sbjct: 79  ERSVIDPSKQELKSETFNL 97


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 378 LTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQQRS 518
           L N++ +++    +  +WV  K D E+KE+ +     TD  L   +S
Sbjct: 641 LVNRLDVDSFLHPKTPKWVFNKQDQEVKEIKALTSTVTDSTLVDTQS 687


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = +3

Query: 294  SDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLNAGKGRQA-----IEWVIGKFDTEI 458
            SD S TL K+ + +      +SS  ++L  + +++ A     +     +E  I + +  I
Sbjct: 943  SDLSSTLEKKLSSIKKDEQTISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNI 1002

Query: 459  KELASSACKSTDELLSQQRSQLMTSQHQQED 551
            +EL     +  DELL +QRS     Q  +E+
Sbjct: 1003 RELNEKLMRLDDELLLKQRSYDTKVQELREE 1033


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +1

Query: 175 YASEISEVNPIQRQMTLKTTNLTFCH*LLLMKLYGILHILQIPQKHY*NKKL*SLYKVCL 354
           Y   +  + PI  ++  +      CH  +L  +YG  H L + +  + N  L ++ K  L
Sbjct: 325 YMDVVRRLEPIIMELERQGDVFIICHQAILRCIYGYYHNLSLEELPFINVPLHTIIK--L 382

Query: 355 SVVTWKT 375
           + +T++T
Sbjct: 383 TPMTYET 389


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 204 NTATDD--FKN-NKPNILSLIAVDETVRYTPHPSDSSK 308
           +TA +D  +KN N  N+ S +++ E   Y PHP+ + K
Sbjct: 219 STAFEDIPWKNPNTENLTSQVSIKEPKLYEPHPTTAIK 256


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +1

Query: 73  RKVVDGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTN 237
           RK+++ +LH+H  +SS +F+   +   +  A +  +     +NP  R  +  ++N
Sbjct: 42  RKIINEMLHSHSELSS-FFYAEKSNTFLTIAGLAESELFDTLNPAFRISSCPSSN 95


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +3

Query: 219 DFKNNKPNILS---LIAVDETVRYTPHPSDSSKTL 314
           DF NNKPN+L      AV E   Y PH   S  +L
Sbjct: 729 DFLNNKPNLLRHDVNYAVREADVYHPHVDTSIDSL 763


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 303 SKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLN 401
           S  L   ++++ V+GV    +++ L TNKI+L+
Sbjct: 22  SVCLNSSKSLIRVEGVDAVKFLQGLTTNKITLD 54


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 186 DIRS--KPNTATDDFKNNKPN 242
           D+RS      ATDDF +NKPN
Sbjct: 209 DVRSLVAGTPATDDFSHNKPN 229


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -3

Query: 283 VYRTVSSTAINDRMLGLLFLKSSVAVLGLLLISH*HNIFL--QYQLAPGPIVEKTIWN*L 110
           + +T  +T +   +  LL + SSV     L I +    FL  + QLAP      T W   
Sbjct: 95  ILKTCGTTTLLASLPRLLEIASSVGFDRPLRIFYSRKNFLYPERQLAP-----HTSW--- 146

Query: 109 IYEYEVHHLQLFFPQHLS 56
             E EV +LQLFFP   S
Sbjct: 147 --EEEVRYLQLFFPSGCS 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,907
Number of Sequences: 5004
Number of extensions: 59398
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)