Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20111
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0533 - 29818276-29818866                                         35   0.052
09_04_0567 + 18585556-18586113                                         33   0.16 
09_06_0315 - 22246879-22247643,22247722-22247862,22248509-222485...    29   2.6  
07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041           29   4.5  
04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718           28   6.0  

>02_05_0533 - 29818276-29818866
          Length = 196

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
 Frame = +3

Query: 201 PNTATDDFKNNKPNILSLIAVDETVRYTPHPSDSSK-TLLKQEAVVTVQGVPLSSY---- 365
           P  A D    N  ++  LI V+E   Y PHP    + T  +QE   T++  PLS+     
Sbjct: 99  PRRAMDVVVRNV-SLRGLIEVEERSTYRPHPERPEEWTQFRQET--TIRCRPLSALAAVA 155

Query: 366 --MEDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELASSA 479
             +E     +   N+ KGR+ +E +    + E    ASSA
Sbjct: 156 EKVETRCAERFLQNSAKGREVVERICRYLEAEAAGAASSA 195


>09_04_0567 + 18585556-18586113
          Length = 185

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
 Frame = +3

Query: 240 NILSLIAVDETVRYTPHPSDSSK-TLLKQEAVVTVQGVPLSS-------YMEDLLTNKIS 395
           N+ +L+ V+ET  Y PHP    + TL +QE   +++  PL++        +E     +  
Sbjct: 106 NLRALVHVEETCSYRPHPERPDEWTLFRQE--TSIRCAPLAAVAAWAAEMVERRCAERFR 163

Query: 396 LNAGKGRQAIEWV 434
            NA +GR+ +E +
Sbjct: 164 QNASQGREVVETI 176


>09_06_0315 -
           22246879-22247643,22247722-22247862,22248509-22248561,
           22248755-22248919,22249685-22249799,22249937-22250025,
           22250578-22250608
          Length = 452

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 1   VAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKW-FFPRW 141
           V++A     P P++PAV    ++  +VV  + +   +  S W FF RW
Sbjct: 48  VSKAEVLASPPPISPAVNAVIIIRNRVVLSIANIFSVAVSLWPFFVRW 95


>07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041
          Length = 86

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 63  CCGKKSCRWCTSYS*ISQFQMVFSTMGP-GANWYCKNMLC 179
           CC   +C   T    ++QF+  FST+ P G    C+ M C
Sbjct: 30  CCSYNTCEDSTIKCTMTQFEDQFSTIKPDGIQVRCRKMCC 69


>04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718
          Length = 587

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 384 NKISLNAGKGRQAIEWVIGKFDTEIKEL---ASSACKSTDELLSQQ 512
           +K S N GK R+ ++W+ G F+   K +   A + C+  D  + +Q
Sbjct: 107 SKDSNNKGKFRELVQWLAGNFEEVNKVVLGNAPTGCQMIDHKIQKQ 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,733,989
Number of Sequences: 37544
Number of extensions: 345108
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)