Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20111
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)                      32   0.50 
SB_49863| Best HMM Match : RseA_C (HMM E-Value=8.1)                    29   4.6  
SB_30441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     28   8.1  
SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32)                   28   8.1  

>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
          Length = 895

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 15/78 (19%), Positives = 40/78 (51%)
 Frame = +3

Query: 321 QEAVVTVQGVPLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDEL 500
           Q A++ + G+P+   ++D++ +         ++ ++  I  FDT ++ + S++  S    
Sbjct: 513 QSALLLLHGIPVVYNLDDIIEDNEKKRKETEKKKLKESIESFDTSVESIGSNSTGSPGRD 572

Query: 501 LSQQRSQLMTSQHQQEDQ 554
            S ++ ++    + QED+
Sbjct: 573 KSDKQRKITQISNGQEDK 590


>SB_49863| Best HMM Match : RseA_C (HMM E-Value=8.1)
          Length = 195

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/90 (26%), Positives = 43/90 (47%)
 Frame = +3

Query: 186 DIRSKPNTATDDFKNNKPNILSLIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGVPLSSY 365
           +I+SKP  +      NKP+++      ++   +P   + +K L K   VV  +   L S 
Sbjct: 12  EIKSKPFLSNQSTDTNKPSLMEKRRQIDSAFLSPR-KEKTKALNKLGIVVKPRTPSLGSN 70

Query: 366 MEDLLTNKISLNAGKGRQAIEWVIGKFDTE 455
            E+  T+  +LN G+ R  ++     +DTE
Sbjct: 71  GEETCTSTNALN-GEQR-LVDTTNTNYDTE 98


>SB_30441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/81 (22%), Positives = 32/81 (39%)
 Frame = +3

Query: 252 LIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLNAGKGRQAIEW 431
           ++  ++ VR T   SD +  +     V  + G    +   ++ T  + +N G   + +  
Sbjct: 47  MVQANDMVRPTSRQSDRTPLVHGGTMVTGIDGAVTKTVPPEISTGGLLVNVGSDEEPVHH 106

Query: 432 VIGKFDTEIKELASSACKSTD 494
           V    DTE K  A     S D
Sbjct: 107 VKQTTDTERKLAAMGLSSSAD 127


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 441 KFDTEIKELASSACKSTDELLSQQRSQLMTSQHQQEDQWMISHLKQK 581
           +F+T +KEL  S  +  +E++ +  S+L    + QE + MI  L+ K
Sbjct: 53  EFETTMKELEQSYLREKEEIIKRLGSEL--DDNVQEKERMIEELEAK 97


>SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32)
          Length = 965

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 88  GVLHTHRLVSSKWFFPRWAQALIGTAKICYASEIS 192
           G+  T  L+  K++FPR  + +     IC++ ++S
Sbjct: 605 GITKTKELLRRKYWFPRMNKRIEDIVSICFSCQVS 639


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,062,551
Number of Sequences: 59808
Number of extensions: 429487
Number of successful extensions: 970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)