Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20111
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    72   3e-13
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    38   0.007
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    28   7.1  
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    27   9.4  

>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 32/80 (40%), Positives = 52/80 (65%)
 Frame = +1

Query: 1   VAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKWFFPRWAQALIGTAKICYA 180
           VAQAA+RKYPNP+N ++ G DVV++ +  G + T R++ S +  P WA  L G +   Y+
Sbjct: 17  VAQAAFRKYPNPLNRSITGIDVVKQTLEAGKILTERIIQSHFSIPSWATKLTGFSGTQYS 76

Query: 181 SEISEVNPIQRQMTLKTTNL 240
            E + ++P +++ +L T NL
Sbjct: 77  HEYTVIDPTRKEFSLTTRNL 96



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 30/84 (35%), Positives = 45/84 (53%)
 Frame = +3

Query: 249 SLIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLNAGKGRQAIE 428
           S + VDE + YTP   D +KT+LKQ+ +VT+     + Y E    +  S NA KGRQ +E
Sbjct: 100 SFLRVDEKLTYTPAHEDPNKTILKQDVIVTITLPAFADYCEKTFLSIYSQNANKGRQGVE 159

Query: 429 WVIGKFDTEIKELASSACKSTDEL 500
           WVI     E + +++       E+
Sbjct: 160 WVIDHLKKEYEAISTKVSSEVHEM 183


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +1

Query: 1   VAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKWF-----FPRWAQALIGTA 165
           VA A W +YPN     +I  DV+ER++ D  + T +L+  +        PRW   +    
Sbjct: 18  VASAFWDRYPNSHAKHIISEDVLERQITDNTIVTKKLIVKQGSSILKRVPRWISRMT-DI 76

Query: 166 KICYASEISEVNPIQRQMTLKTTNLT 243
           ++    E S  + + +++   T N++
Sbjct: 77  QVVPVIEESVYDKVSKKLVTYTRNVS 102


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +3

Query: 360 SYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELAS-SACKSTDELLSQQRSQLMTSQ 536
           SYM+D++ +  S+  G  R    WV      E   L   +ACK  DEL      + +  Q
Sbjct: 428 SYMQDIMGDIFSMGFGPFR----WVCTSGKPEDLRLTDQTACKIIDELKDTDVPEYVKQQ 483

Query: 537 HQQEDQWMISHLKQK 581
           +    +W+    K K
Sbjct: 484 YLDNKKWIEEAEKNK 498


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 309 FLRNLKDVEYTVQFHQQQLMTEC*VCCF*SHLSLYWVYF*YLTSITYFCSTN 154
           F RNLK++  T   H++  +T   + C    +S +WV F + + IT+   TN
Sbjct: 280 FHRNLKEIFNTKNCHKEGQVTS--LNCI-RVISTFWVIFGHCSEITFMVITN 328


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = -1

Query: 618 LALVNFSISSSVLFALDEISSIDLLADVVMSSI 520
           + +V ++  ++V+  L++I+SID LAD+V  ++
Sbjct: 92  IGIVTYNRDATVVADLNKITSIDQLADIVFGAL 124


>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
           protein C50C3.2 protein.
          Length = 2107

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 198 KPNTATDDFKNNKPNILSLIAVDETVRYTPHPSDS-SKTLLKQEAVVT-VQGVPLSSY 365
           K    T++ +N KP I+   A+ E    TP+  DS S+  +K +AV+   QG   S Y
Sbjct: 824 KLEALTEEVENYKPRIVETHALLEDALVTPNTKDSTSQQTMKLKAVLARKQGEIESDY 881


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 157 GTAKICYASEISEVNPIQRQMTLKTTNLTF 246
           GT K    +E+ E+NP + + T   +NLTF
Sbjct: 66  GTPKKLTRAEVQEINPAKFEKTEDMSNLTF 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,773
Number of Sequences: 27780
Number of extensions: 330675
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)