Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20111
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 121 KWFFPRWAQAL 153
           K+FFP+W Q L
Sbjct: 648 KFFFPKWLQVL 658


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 18/87 (20%), Positives = 31/87 (35%)
 Frame = +3

Query: 219 DFKNNKPNILSLIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISL 398
           +F     N+      ++ ++Y        +  +    V+T QGV LS Y    +     L
Sbjct: 322 EFAGRPQNLQLQSQRNQLIQYVATLEKRLRDAIDSGNVITPQGVFLSLYQPQGMNILGDL 381

Query: 399 NAGKGRQAIEWVIGKFDTEIKELASSA 479
             G GR       G      ++L  +A
Sbjct: 382 IEGTGRSVNPRYYGSLQAAARKLLGNA 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 498  LLSQQRSQLMTSQHQQEDQ 554
            L  QQR+  M  Q QQ+ Q
Sbjct: 1198 LQEQQRNAAMVQQQQQQQQ 1216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,392
Number of Sequences: 438
Number of extensions: 4145
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)