Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20111
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13070.1 68418.m01498 MSF1-like family protein similar to px1...    39   0.004
At4g24790.1 68417.m03550 expressed protein ; expression supporte...    31   0.71 
At3g28870.1 68416.m03604 hypothetical protein                          31   0.94 
At5g07320.1 68418.m00836 mitochondrial substrate carrier family ...    30   1.6  
At1g58260.1 68414.m06625 cytochrome P450 family protein similar ...    29   2.2  
At1g09320.1 68414.m01043 agenet domain-containing protein contai...    29   3.8  
At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger) fa...    28   5.0  
At5g52580.1 68418.m06529 hypothetical protein                          28   5.0  
At5g67240.1 68418.m08475 exonuclease family protein contains exo...    27   8.8  

>At5g13070.1 68418.m01498 MSF1-like family protein similar to px19
           [Gallus gallus] GI:969170; contains Pfam profile
           PF04707: MSF1-like conserved region
          Length = 183

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
 Frame = +1

Query: 1   VAQAAWRKYPNPMNPAVIG----TDVVERKV--VDGVLHTHRLVSSKWFFPRWAQALIGT 162
           V+ A+WRK+ +P N  ++      D + RK+    G LHT R ++     P +   +IG 
Sbjct: 18  VSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRALTIHAPGPWFLHRIIG- 76

Query: 163 AKICYASEISEVNPIQRQMTLKTTNLT 243
             IC+  E + V+   R M L T N++
Sbjct: 77  QDICHCVESTVVDGKSRSMQLTTKNIS 103



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +3

Query: 240 NILSLIAVDETVRYTPHPSD-SSKTLLKQEAVVTVQGV----PLSSYMEDLLTNKISLNA 404
           ++   I V+E +RY PHP + S+ T+  QE  + ++ +     ++  +E     K   N+
Sbjct: 103 SLKKFIEVEERIRYDPHPDNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNS 162

Query: 405 GKGRQAIEWVIGKFDTE 455
            KGR+ +E +    + E
Sbjct: 163 AKGREVMERICKYMEAE 179


>At4g24790.1 68417.m03550 expressed protein ; expression supported
           by MPSS
          Length = 815

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 663 QRHAYYSSFQLLWLALALVNFSISSSVLFALDEISSIDLLADVVMSS 523
           ++H   S  Q  WL +AL+  S + S  FA DE     +  DV +SS
Sbjct: 567 EKHLRASKNQTTWLTVALLQLSNTDSSSFATDENGRNQINKDVELSS 613


>At3g28870.1 68416.m03604 hypothetical protein
          Length = 355

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 441 KFDTEIKELASSACKSTDELLSQQRSQLMTSQHQQEDQWMISHLKQK-AHLMI*KN*LKL 617
           K + E+K+L +   +  + L  +   + +T  HQ+    ++S LKQK  H+   +  LK 
Sbjct: 181 KGEMELKDLGAKFYRCVEMLYGEDMFETVTEDHQRALPMILSRLKQKLRHVTTARERLKP 240

Query: 618 MPTRGAEKRS-NMHASAI 668
           +  +  EK S N   S I
Sbjct: 241 LWKQTIEKLSTNQRGSTI 258


>At5g07320.1 68418.m00836 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427
           (mitochondrial carrier superfamily); contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 479

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 294 SDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISL 398
           +DSSKT +KQE + T++G  L  +   LL N + +
Sbjct: 424 ADSSKTTMKQEFMNTMKGEGLRGFYRGLLPNLLKV 458


>At1g58260.1 68414.m06625 cytochrome P450 family protein similar to
           cytochrome P450 GI:984542 from [Sorghum bicolor]
          Length = 530

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 8/44 (18%), Positives = 26/44 (59%)
 Frame = +1

Query: 169 ICYASEISEVNPIQRQMTLKTTNLTFCH*LLLMKLYGILHILQI 300
           + Y   + ++  +++ + ++ T LT+CH +++  ++G  H  ++
Sbjct: 164 VTYVYNLCQLGSVRKPINVRDTILTYCHAVMMRMMFGQRHFDEV 207


>At1g09320.1 68414.m01043 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 517

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
 Frame = +3

Query: 273 VRYTPHPSDSSKTLLKQEAVVT-VQGVPLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFD 449
           V Y    ++  K  L++E  V+ ++ +PL S M         +NA         VI K  
Sbjct: 415 VEYDNLKAEDGKEPLREEVNVSRIRPLPLESVMVSPFERHDKVNALYNDGWWVGVIRKVL 474

Query: 450 TEIKELASSACKSTDELLSQQRSQLMTSQHQQEDQWMISHLKQK 581
            +   L     K+T ELL    SQL   Q   + +W+ S   QK
Sbjct: 475 AKSSYLV--LFKNTQELLKFHHSQLRLHQEWIDGKWITSFKSQK 516


>At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL4 [Arabidopsis thaliana] GI:4928399; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 210

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -1

Query: 627 WLALALVNFSISSSVLFALDEISSID--LLADVVMSSIDFFVVIIIHL 490
           +L+++ ++FS SSS     D I  I   +L  + + SI FFV  +IHL
Sbjct: 8   FLSVSSISFSYSSSTDKDFDLICMISPIVLLYITLLSIIFFVAALIHL 55


>At5g52580.1 68418.m06529 hypothetical protein 
          Length = 327

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 609 VNFSISSSVLFALDEISSIDLLADVVMSSIDFFVVIIIHL 490
           +  S S + L   DEIS ID+ AD +  +I FFV+ I  L
Sbjct: 272 IRHSYSENDLLKDDEISYIDVPADPLEVTIIFFVISITML 311


>At5g67240.1 68418.m08475 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 745

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 542 ARRSMDDISSKAKSTLDDIEKLTKANANQR 631
           AR   +++SSK + T D+ E+  +A  NQR
Sbjct: 398 ARAEENNVSSKRQKTEDETEETKEATVNQR 427



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 542 ARRSMDDISSKAKSTLDDIEKLTKANANQR 631
           AR    ++SSK + T D+ E+  +ANA QR
Sbjct: 537 ARTEESNMSSKRQKTEDESEETKEANAKQR 566


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,012
Number of Sequences: 28952
Number of extensions: 296455
Number of successful extensions: 854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)