Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20110
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    28   0.85 
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   2.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   6.0  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   6.0  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   6.0  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   6.0  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   7.9  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 112 YDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRWKATSIRYLFTC 291
           Y+   P  ++S +   +L S L      LD++ K L+L FP++I + R     +   F C
Sbjct: 153 YELPDPETKKSKIK--ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRVFFGQLMKHFYC 210

Query: 292 L 294
           L
Sbjct: 211 L 211


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 65  PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 160
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 103  YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGR 255
            +  Y  F    +E   +T S + NL  E+++L NM+ EL  KFP +   GR
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGR 1532


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 52  AAVSAAPQYYHGSSHWPYHHYDPFSP 129
           A  +A PQYY     +P  HY P  P
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQP 527


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 139 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGR 255
           E   + + +W+++  +MQ  D   ++L   F  I N G+
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGK 142


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
 Frame = +1

Query: 199 DNMMKELSLKFPSII-NEGRWKA-TSI---RYLFTCLVTNRKTST*KRKMEC*WCRLTV 360
           +N++KE++ K+ SII N+ + K+ TSI    YL+   V   K    ++K+   W  +TV
Sbjct: 6   NNLLKEVAAKYASIILNDAKIKSLTSINSAEYLYDSFVEISKLPL-EKKLPLKWKLITV 63


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 103 YHHYDPFSPYVRESMLDTHSLWSNL 177
           + H+DP+S ++  ++ + H  W+ L
Sbjct: 292 FFHFDPYSLFISNNLEEIHINWNIL 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,238
Number of Sequences: 5004
Number of extensions: 48017
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)