Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20110
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0740 - 27699609-27699761,27699864-27700004,27700094-277001... 31 0.87
05_03_0515 + 14930736-14932697 30 1.1
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 30 1.5
04_04_0347 + 24564589-24565296 29 2.0
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 29 2.0
06_03_1033 - 27035977-27036144,27036420-27036544,27036695-270367... 28 6.1
02_04_0392 - 22578488-22578811,22578895-22578900 27 8.1
02_01_0393 - 2863335-2864534 27 8.1
>04_04_0740 -
27699609-27699761,27699864-27700004,27700094-27700171,
27700298-27700399,27700492-27700548,27700690-27700788,
27700896-27700967,27701062-27701202,27701281-27701413,
27701623-27701690,27701770-27701775
Length = 349
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 165 LVQPCQRNATLGQHDEGAVVEVPQHYKRRTVEGDKYQISIHLPGYEQKDINVKAK--NGV 338
L QP T+ +++EV + K TVE +K+ +S+H ++K+ + A+ N V
Sbjct: 179 LFQPANEFLTMITEVSKSLIEVTKAIKGATVENNKFCVSVHYRNVDKKNWKLVAQVVNNV 238
Query: 339 L 341
L
Sbjct: 239 L 239
>05_03_0515 + 14930736-14932697
Length = 653
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 25 IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSNLANEMQHLD 201
+ L +C + V +P + +W YH + YV +S+ ++ S WSN + L
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLS 367
Query: 202 NMMKE 216
+ +
Sbjct: 368 SCFSD 372
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 243 KRRTVEGDKYQISIHLPGYEQKDINVK 323
K VEGD Y + +H PG+ K ++V+
Sbjct: 222 KEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 22 MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 123
M L+ LLAA SAA +H ++ PY HH+ P+
Sbjct: 5 MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 237 HYKRRTVEGD--KYQISIHLPGYE--QKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDV 404
H+ RRTVEGD Q I LP + Q I+V + NG L + N+ + Q + WD
Sbjct: 1905 HFSRRTVEGDLAADQREILLPAHRLLQALIDVISSNGWLTLALNAMELSQMVTQGM-WDR 1963
Query: 405 NS 410
+S
Sbjct: 1964 DS 1965
>06_03_1033 -
27035977-27036144,27036420-27036544,27036695-27036766,
27036872-27036976,27037513-27037567,27038196-27038276,
27039109-27039159,27039531-27039594,27040783-27040850,
27040993-27041079,27041401-27041655,27041768-27041890,
27042013-27042297,27042948-27043087,27043696-27043759,
27043929-27044048
Length = 620
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 19/91 (20%)
Frame = +3
Query: 291 PGY-EQKDINVKAKNGVLMVQANSAFNH----YLKIQNLPWD------------VNSEGS 419
PGY E ++ +N +++ +AN+ FN YL +++ W +E
Sbjct: 525 PGYYEDGSFGIRLENVLIVKEANTKFNFGDKGYLAFEHITWTPYQTKLIDTTLLTPAEIE 584
Query: 420 WV--YEKDVLKITFPLKQKQPEDSKRPVAEP 506
WV Y D KI P +Q ++ R EP
Sbjct: 585 WVNAYHSDCRKILQPYLNEQEKEWLRKATEP 615
>02_04_0392 - 22578488-22578811,22578895-22578900
Length = 109
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 70 PQYYHGSSHWPYHHYDPF 123
P YY+ ++PYHHY P+
Sbjct: 91 PPYYY---YYPYHHYSPY 105
>02_01_0393 - 2863335-2864534
Length = 399
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +3
Query: 48 AGGGLGRATVLPWLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRNATLGQHDEGAVVE 227
AG GL LP L S +R + S+ + GH L++ AT G +
Sbjct: 2 AGAGLPSWWALPLLRVPTSSAVRIIPSIAAAAARGHDLLLLRASSSEATRGFSSSTSAPA 61
Query: 228 VPQH 239
P H
Sbjct: 62 APAH 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,331
Number of Sequences: 37544
Number of extensions: 338818
Number of successful extensions: 1060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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