Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20110
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)                   30   1.2  
SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)                28   4.8  
SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)                   28   4.8  
SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)                28   6.3  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.3  
SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)                   27   8.3  
SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0)                        27   8.3  

>SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 151

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 399 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTRRP 518
           DVN +G  VY KD L+  F L  K  +DSK  RP  +PT+ P
Sbjct: 112 DVNGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTKVP 151


>SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)
          Length = 552

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 399 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTRRP 518
           DV+ +G  VY KD L+  F L  K  +DSK  RP  +PT+ P
Sbjct: 423 DVDGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTKVP 462


>SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)
          Length = 566

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
 Frame = +1

Query: 88  SSHWP---YHHYDPFSPYVRESML----DTHSLWSNLANEM-QHLDN---MMKELSLKFP 234
           S  WP   YHH +  S Y  +S L    ++++L S  A E+  HL         L +KFP
Sbjct: 173 SHDWPQGVYHHGNVQSLYRYKSFLKPEIESNTLGSAPAGELLTHLQPSYWFSAHLHVKFP 232

Query: 235 SIINEGRWKATSIRYLFTCL 294
           +II  G  K T    L  CL
Sbjct: 233 AIIPHGGDKNTKFLALDKCL 252


>SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)
          Length = 315

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 264 DKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNH-YLKIQNLPW 398
           D Y++  +    EQ+D N   K G   VQ    FN+ Y  I+ L W
Sbjct: 22  DDYEVDENSDDEEQEDPNDYCKGGYHPVQLGDLFNNRYSVIRKLGW 67


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 133  VRESMLDTHSLWSNLANEMQHLDNMMKELSL 225
            + ES L+TH +  NLA E+  LDN   E++L
Sbjct: 4396 IAESQLETHDVL-NLAYEITELDNSPPEIAL 4425


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 428  VNPAAFGIHIPGKVLYFQVMIKSTVSLHHQH-SIFRFHVDVFLFVTRQVNRYLILVAFHR 252
            ++P  +  HI  +  ++   IK    LH+++ S+      +   +     R+   +AF R
Sbjct: 5830 IHPRGWYRHIAMRAEFYGCQIKFIPHLHNRYLSLPEAKNSLVTLLAESQQRFAADIAFTR 5889

Query: 251  PSFIMLGNFN 222
              F+  GNF+
Sbjct: 5890 SCFVFQGNFD 5899


>SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 369 HYLKIQNLPWDVNSEGSWVYEKDVLKITFPLKQKQP 476
           H+L+I  LP +VNS+    ++ D +  + P+    P
Sbjct: 839 HHLRISPLPINVNSQSGSTFQADCIIYSEPVDDSAP 874


>SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 422

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 84  WLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRN-ATLG 200
           W+V L+  P+ PL    S KH+   F     C++N AT+G
Sbjct: 368 WMVFLSC-PVNPLVYAYSSKHIRDAFKRGLKCKKNTATIG 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,392,766
Number of Sequences: 59808
Number of extensions: 372477
Number of successful extensions: 1230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)