Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20110
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    29   0.044
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 28.7 bits (61), Expect = 0.044
 Identities = 31/98 (31%), Positives = 44/98 (44%)
 Frame = +2

Query: 248 KDGGRRQVSDIYSPAWLRTERHQRESEKWSADGAG*QCF*SLLENTEPSLGCEFRRQLGL 427
           +D  RR V++  SP      R  R +   +      + F SLL +TE      FR+    
Sbjct: 681 QDVARRSVAN--SPTKNADSREYRSNSMGAVMTRNSEMFSSLLSDTEQ----HFRQHRDS 734

Query: 428 RERRVENHLPAEAKAARG*QEASCRAHETTSTNVSREE 541
              RVEN      ++A    EAS  A+ +TS+  SREE
Sbjct: 735 LSPRVEN------RSAIVHSEASANANSSTSSEESREE 766


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 RQLGLRERRVENHLPA 460
           R++ L ERR ++HL A
Sbjct: 230 RRIVLEERRAQSHLEA 245


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 124 SPYVRESMLDTHSLWSNLANEMQHLDNMMKELS 222
           SP   +S +  HSL+     +  H D+  +  S
Sbjct: 84  SPTQLQSFMQQHSLYLQQQQQQHHQDSSSEHAS 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,294
Number of Sequences: 438
Number of extensions: 3600
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)