Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20110
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22060.1 68414.m02759 expressed protein                             31   0.55 
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    30   0.96 
At3g28345.1 68416.m03541 ABC transporter family protein similar ...    28   3.9  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    28   3.9  
At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to...    28   5.1  
At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to...    28   5.1  
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ...    27   6.8  
At4g34920.1 68417.m04951 1-phosphatidylinositol phosphodiesteras...    27   6.8  
At5g47420.1 68418.m05843 expressed protein contains Pfam domain,...    27   9.0  
At3g02980.1 68416.m00293 GCN5-related N-acetyltransferase (GNAT)...    27   9.0  

>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 139  ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINE 249
            E MLDT   +S++  E++ + +   +LSLKF  +  E
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGE 1968


>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
           putative ATP-dependent helicases
          Length = 1058

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 18/82 (21%), Positives = 39/82 (47%)
 Frame = +3

Query: 249 RTVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGSWVY 428
           R++ G+   + +   G   +D+    K+      ++S F+ Y+K + L  D       + 
Sbjct: 18  RSINGESTTVQVSSDG-TIRDLKKALKSCFPPASSSSNFHLYIKGEKLKLDTRVAAITIN 76

Query: 429 EKDVLKITFPLKQKQPEDSKRP 494
           + D+L + FP K+K+   + +P
Sbjct: 77  DGDILGL-FPFKKKELRQTPKP 97


>At3g28345.1 68416.m03541 ABC transporter family protein similar to
           P-glycoprotein [Arabidopsis thaliana] GI:3849833;
           contains Pfam profiles PF00005: ABC transporter,
           PF00664: ABC transporter transmembrane region
          Length = 1240

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = +3

Query: 114 RPLQSLRSGKHVGHTFALVQ---PCQRNA-TLGQHDEGAVVEVPQHYKRRTVEGDKYQIS 281
           R +Q       +G T  L+       RNA  +     G +VE   H +       +Y   
Sbjct: 534 RVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTL 593

Query: 282 IHLPGYEQKDINVKAKNG 335
           +HL   E++DINV  K G
Sbjct: 594 VHLQQIEKQDINVSVKIG 611


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 201 QHDEGAVVEVPQHYKRRTVEGDKYQISIHLPGYEQKDINVK-AKNGVLMVQANSAFNHYL 377
           +  E  +VE+ +  K +TVE D   I+I+    E+K +  + ++NG++  +   A N   
Sbjct: 159 KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIK 218

Query: 378 KIQ 386
           ++Q
Sbjct: 219 ELQ 221


>At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to
           carboxypeptidase D [Anas platyrhynchos]
           gi|2789654|gb|AAB96915
          Length = 491

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 240 YKRRTVEGDKYQISIHLPGYEQKDINV 320
           Y R  V G KY+++   PGY+ K   V
Sbjct: 378 YHRLLVPGQKYEVTASSPGYKSKTTTV 404


>At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to
           carboxypeptidase D [Anas platyrhynchos]
           gi|2789654|gb|AAB96915
          Length = 422

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 240 YKRRTVEGDKYQISIHLPGYEQKDINV 320
           Y R  V G KY+++   PGY+ K   V
Sbjct: 309 YHRLLVPGQKYEVTASSPGYKSKTTTV 335


>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
           protein KIAA0332 - Homo sapiens, EMBL:AB002330
          Length = 946

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 157 HSLWSNLANEMQHLDNMMKELSLKFP 234
           HS W  + +E +H+ N   E+ +K P
Sbjct: 686 HSTWEEVKSEREHIKNSYAEVEMKEP 711


>At4g34920.1 68417.m04951 1-phosphatidylinositol
           phosphodiesterase-related contains weak similarity to
           1-phosphatidylinositol phosphodiesterase precursor (EC
           3.1.4.10) (Phosphatidylinositol-specific phospholipase
           C) (PI-PLC). (Swiss-Prot:P34024) [Listeria
           monocytogenes]
          Length = 318

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 124 SPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKF 231
           S Y++++ +DT   W+   + ++HL       S KF
Sbjct: 209 SDYLKDNWIDTDLPWTKFQSNLKHLSEQQPTSSRKF 244


>At5g47420.1 68418.m05843 expressed protein contains Pfam domain,
           PF01987: Protein of unknown function
          Length = 282

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 118 PFSPYVRESMLDTHSLWSNLANEMQHLDNMMK 213
           PF PYV +S  DT + +  L  E Q +  M+K
Sbjct: 9   PFQPYVYQSQQDTITPFQILGGESQVVQIMLK 40


>At3g02980.1 68416.m00293 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile: PF00583
           acetyltransferase (GNAT) family
          Length = 247

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 386 LYFQVMIKSTVSLHHQHSIFRFHVDVFLFV 297
           LY ++M +    LH  + I R H D FLFV
Sbjct: 165 LYKRLMFRCVRRLHGFYLINRHHFDAFLFV 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,658,498
Number of Sequences: 28952
Number of extensions: 259071
Number of successful extensions: 892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)