Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20108
         (530 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.96 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   5.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.8  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   8.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   8.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.9  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
 Frame = -3

Query: 450 LSRHETASSSHRVANVLAVP---AASKAHTGPAGGATHRPAHSGGGT 319
           L  H  A +  R    + VP      +   GPA    H PAH   GT
Sbjct: 303 LHDHRPALAQQRRVAAVQVPQLAGGGRRGPGPARSRRHLPAHLVAGT 349


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 324 HRRCVQGGAWPRRQDQCAPL 383
           +R C    +WP R  + AP+
Sbjct: 28  YRDCTTASSWPGRPPKRAPV 47


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +2

Query: 245  GERQEVSAPDMRAPGELVRARVREGVPPPLCAGRCVAPP 361
            G+++ +   D   P        RE  PP + +   V PP
Sbjct: 1770 GQQETIPPIDEEPPSVEAVEEEREEAPPSVHSSTVVPPP 1808


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 416 LCELEAVSCRESTYYAVTSL 475
           +C++E VSC+++    V  L
Sbjct: 133 VCDVEMVSCKDAALRKVVPL 152


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 188 SDCMDKSRLRQSTVHSNEIGER 253
           SDC       Q+  H+NE+  R
Sbjct: 27  SDCDKNQNTEQNYTHNNEMYHR 48


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 188 SDCMDKSRLRQSTVHSNEIGER 253
           SDC       Q+  H+NE+  R
Sbjct: 27  SDCDKNQNTEQNYTHNNEMYHR 48


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 338 HTAAVAPPRGPSLGPAHPGLS 276
           ++AA   P  PS+   H G S
Sbjct: 123 YSAAAPGPSDPSVSSCHQGFS 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,257
Number of Sequences: 336
Number of extensions: 2987
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)