Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20108
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   4.0  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    26   4.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   7.0  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   7.0  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   9.3  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 25/86 (29%), Positives = 38/86 (44%)
 Frame = -3

Query: 435 TASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTS 256
           TAS +    + +    AS ++TG   G +    +S G + S+T   TSS     S +L  
Sbjct: 606 TASGTTSSTSEIVSTPASNSNTGSLNGTSSFNVNSVGPSSSQT-TPTSSSSITGSQSLKE 664

Query: 255 *RSPISLE*TVDWRSRLLSIQSLKLY 178
             SP  +  TV + S   S+ S   Y
Sbjct: 665 TSSPAYVSSTVSYTSS--SVDSSSTY 688


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = -3

Query: 450 LSRHETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALIS 271
           LS H+++SSS   ++   V +A   ++  +  ++H  +HS     S+ +   SS   L S
Sbjct: 403 LSSHKSSSSSK--SSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTS 460

Query: 270 GALTS*RSPI 241
            + T  RS +
Sbjct: 461 SSHTYERSTV 470


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 178 QTKTFPLNISN*VQIQTPPHSVRDS 104
           Q  +FPL   N  Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 428 RVHIE*RMSSPFRLHQRRTLVLPAGPRTALHTAAVAPPRG 309
           R+H   + ++ F +H +RT++  A   +AL T  V P  G
Sbjct: 38  RIHQVVQEATKFMVHSKRTVLTSADISSALRTLNVEPLYG 77


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 248 ERQEVSAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAG 367
           +RQ VS+ D   P +  + +V +  PP L +     P +G
Sbjct: 356 QRQSVSSYDTIVPSQFYKQKVVQNSPPSLLSTDNKIPESG 395


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 213  SRLLSIQSLKLYKQKPFRLTFPTESKYRHHR--TAYEIVLIRNTNVARLSNYQNARIVVF 40
            S +  +Q+    K KP  L   TES+ + +R     E++ ++  + ARL   + + ++  
Sbjct: 1125 SAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLEVLNLKPDSEARLQAIERSELLQK 1184

Query: 39   RR 34
            +R
Sbjct: 1185 KR 1186


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 295 QLTRGSHIRCADFLTLPNLVGMNGRLAQSAFIHTVTKTIQTK---TFP 161
           +L +  H RC+DFL   N++     L Q+  +   T   Q +   TFP
Sbjct: 250 KLAQDEHWRCSDFLLHQNILFPPSTLVQNGIVTYSTVLKQDELLITFP 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,871
Number of Sequences: 5004
Number of extensions: 47400
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)