Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20108
(530 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 36 0.027
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 35 0.047
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.14
SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36) 32 0.33
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 0.58
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 1.0
SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_15403| Best HMM Match : CH (HMM E-Value=0) 29 2.4
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_15725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_35205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29) 28 5.4
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 28 5.4
SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26) 27 9.5
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 27 9.5
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44) 27 9.5
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 35.5 bits (78), Expect = 0.027
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 305 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
+ R+G P +C G C A PVC D + ++ C L+ SCR++ V S G C
Sbjct: 5285 KARDGRPECVCDGICSLVYA-PVCGTDG----QEYSNECNLQIASCRKNELIEVASRGSC 5339
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 368 PVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
PVC D +T+ CEL +C+ + V SL C
Sbjct: 5630 PVCGSDG----KTYNNECELRQYACKSDSLITVASLSSC 5664
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 34.7 bits (76), Expect = 0.047
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +2
Query: 308 VREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
VR G P +C C A PVC D +T+ C LE SC+ +T +V G C
Sbjct: 33 VRYGQPVCVCNEACTREYA-PVCGSDG----KTYPNPCALEVESCKTNTRISVIKKGSC 86
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 299 RARVREGVPPPLCAGRCVAPPA-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSL 475
R +V +G P +C P + PVC+ T TF T C +E +C ES V
Sbjct: 132 RCQVIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARR 187
Query: 476 GXC 484
G C
Sbjct: 188 GEC 190
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 335 CAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
C PA VC +D +T+ + C +EA CR + + LG C
Sbjct: 687 CPSESDCLPAAKVCGYDGK-VMKTYQSQCHMEAEGCRMAKDLQLIRLGSC 735
Score = 31.9 bits (69), Expect = 0.33
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 245 GERQEVSAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAG-PVCAFDAAGTARTFATLC 421
G + VS ++R P + +EG C C PP+G PVC D +++ + C
Sbjct: 1652 GACERVSCGNIRCPRFSMCISAQEGGIKCSCPIYC--PPSGQPVCGSDG----KSYGSEC 1705
Query: 422 ELEAVSCRESTYYAVTSLGXC 484
EL +C + S G C
Sbjct: 1706 ELRKEACEAKIKLTLVSKGKC 1726
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 308 VREGVPPPLCAGRCVAPPA-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
V +G P +C P + PVC+ T TF T C +E +C ES V G C
Sbjct: 64 VIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARRGEC 119
>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
Length = 1173
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 493 NYSAXSQTCDGVIRAFATRNSLEFT*SSECPRRSGCIKGAHWSCRRGHAPP 341
N + S + D + AF NS + +CP R C+ G H +C G++ P
Sbjct: 293 NLNDRSASSDAMTSAF---NSAVLPVAYQCPIRESCLGGLHGACSMGYSGP 340
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 419 IE*RMSSPFRLHQRRTLVLPAGPRTALHTAAVAP 318
+E + SS L Q+ T + PA PR+AL TA V+P
Sbjct: 95 LELQQSSMALLQQQSTPIAPARPRSALQTAPVSP 128
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 305 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSC 442
+V++ P C RC+ P PVC D +T+ LCE+ SC
Sbjct: 4227 KVKDEKPVCECPSRCL-PDKEPVCGADG----KTYRNLCEIRKASC 4267
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 317 GVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
G P +C C + + PVC D +T+ CEL+ +C V S G C
Sbjct: 3964 GQPTCVCNKNCPST-SKPVCGSDG----KTYKNECELKRAACESKKNVTVASQGEC 4014
>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 406 CPRRS--GCIKGAHWSCRRGHAPPCTQRRWHPLAD 308
C +RS C +G+H SC +G P C Q +HP D
Sbjct: 87 CDQRSHPSCDQGSHPSCDQGSHPSCDQ-EYHPSCD 120
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 335 CAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
C C + A PVC D RT+++ C ++A +C+ T AV G C
Sbjct: 803 CNTECPSE-ASPVCGQDG----RTYSSTCAMDARACQAQTSIAVKHPGLC 847
>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 827
Score = 30.7 bits (66), Expect = 0.77
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Frame = +2
Query: 149 GNVK--RKGFCLYSFSDCMD-KSRLRQSTVHSNEIG--ERQEVSAPDMRAPGELVRARV- 310
GN++ + G ++ D M+ + R+ ++G +R +VS P ++ G+L++ +
Sbjct: 402 GNIRFEKSGNPTNAYYDVMNFRKRVPGGKYFIEKVGFWKRDQVSKPQLQVNGKLIQWKTD 461
Query: 311 REGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
VP C+ +C AGT ++F C E C E T + L C
Sbjct: 462 TNAVPTSECSKKC------------PAGTKQSFINRCCWECFQCSEGTVSSEPGLTNC 507
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 305 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
R ++G P +C C + PVC D T+ LC L +C ++T + G C
Sbjct: 588 RAQDGKPVCVCPPGCPSE-VKPVCGTDGV----TYDNLCSLRLKACTDNTRTRFKAFGEC 642
>SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 487 SAXSQTCDGVI-RAFATRNSLEFT*SSECPRRSGCIKGAHWSCRR 356
S+ + C G++ R FA+ ++E S++C + S G +CRR
Sbjct: 350 SSQKRACSGILSRPFASSETIEMENSNDCKQGSLSRAGGEVNCRR 394
>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 353 PRTALHTAAVAPPRGPSLGPAHPGLSYPVR 264
P H APP+ P+ GP HPG +P R
Sbjct: 62 PEVHGHLLQGAPPKAPA-GPEHPGRGHPRR 90
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 314 EGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
+G +C+ C A PVC D T+ LC L A C+ T+ G C
Sbjct: 717 DGKTKCVCSAACTREYA-PVCGSDG----NTYNNLCLLTAARCQSQTFIYRAHFGTC 768
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +2
Query: 347 CVAPPAGPVCAFDAAGT-ARTFATLCELEAVSCRESTYYAVTSLGXC 484
C P A P+ GT T+ LC L A SCR V G C
Sbjct: 1307 CPDPAACPLVKSRVCGTDGITYDNLCRLRAESCRRYQPVNVLHSGYC 1353
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2
Query: 347 CVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
C+ P + A T+ + C LE SC+ Y + G C
Sbjct: 1861 CICPTCPKAKDYLCASNNLTYMSKCHLERASCQLGRYLTIKQKGKC 1906
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 368 PVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
PVC D +T+ CE+ A +C +ST V G C
Sbjct: 1305 PVCGTDG----KTYGNKCEMRASACLKSTMVTVAYPGEC 1339
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 368 PVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
PVCA +T++ C+++A +C T V S G C
Sbjct: 1606 PVCA----SNGKTYSNRCDMDADACIRDTKLTVVSQGAC 1640
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 383 DAAGTAR-TFATLCELEAVSCRESTYYAVTSLGXC 484
D G+ R T++ C L +C+ES V S G C
Sbjct: 1451 DVCGSDRMTYSNECTLTQTACQESKNLTVVSQGPC 1485
>SB_15725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 213 CASLPFIPTRLGSVKKSAHRI*EPRVSWSERGSARGCHRRCVQ 341
CA + R GS+ SA R+ R + G+ R H RC +
Sbjct: 41 CAKALLVTVRKGSINHSAQRLNHSRKGSTTHGAQRLNHPRCAK 83
>SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 353 APPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
+P + +C D RT+++ C L SC Y++ +G C
Sbjct: 226 SPRSTEICGTDG----RTYSSFCALREHSCNVGRLYSIKHIGRC 265
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/50 (24%), Positives = 18/50 (36%)
Frame = +2
Query: 335 CAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGXC 484
C C + + P T+ +LC L +C+ V LG C
Sbjct: 127 CVSNCSSCNSSPADTEVCGADGVTYGSLCRLRVATCKLGKTIGVAYLGSC 176
>SB_35205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 313 ADPRSDQLTRGSHIRCADFLTLPNLVGMN 227
A P+ + TRG R + +T+PN G+N
Sbjct: 104 ASPQPAKFTRGRRFRSSGSITIPNAPGLN 132
>SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)
Length = 407
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +1
Query: 286 G*AGPSEGPRGGATAAVCRAVRGPAGRTSVRL*CSRNGEDIRYS 417
G GP GP+G A GPAG + NGED+RYS
Sbjct: 49 GQRGPP-GPKGSRGIAGEAGPDGPAGPAGLDGKNGINGEDVRYS 91
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 251 RQEVSAPDMRAPGELVRARVREGVPPPLCAGRCVAPP 361
R +SA + + ++ V VPPP R VAPP
Sbjct: 34 RPIISANTFKMASQAIQEAVVHNVPPPQITARPVAPP 70
>SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 366 PAGGATHRPAHSGGGTPSRTLARTSSP 286
PAG R AH+ P+R AR +SP
Sbjct: 304 PAGNEASRTAHASRPAPTRETARETSP 330
>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 406 CPRRSGCIKGAHWSCRRGHAPP-CTQ 332
CP S C+ G CR G+ P C+Q
Sbjct: 233 CPIESSCLGGLESRCREGYTGPLCSQ 258
>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
Length = 308
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +2
Query: 71 DKRATFVFRIKTISYAVRWCLYLDS-VGNVKRKGFCLYSF-SDCMDKSRLRQS-TVHSNE 241
D+ T + KT V + + S VGN R+ +++ +D + R R + +N+
Sbjct: 47 DRHRTKLISSKTCHSKVNLLILVSSYVGNAARRKEIRFTWGTDFLPSPRWRTVFLIGAND 106
Query: 242 IGERQEVSAPDMRAPGELVRARVREG 319
E + A + R G+L+ + REG
Sbjct: 107 NQEEMRLMAAEDRLYGDLITSEYREG 132
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 239 EIGERQEVSAPDMRAPGELVRARVR---EGVP 325
EI E + V + D RAPG+L+ + + EGVP
Sbjct: 2717 EIKEPKSVDSTDTRAPGQLIPVKHKFDFEGVP 2748
>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
Length = 230
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 372 TGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGAL 262
T P P+ +G GTP+R T SP ++SG L
Sbjct: 135 TTPTPTKRPSPSPTGTGTPTRKPEPTLSPTRMLSGLL 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,940,396
Number of Sequences: 59808
Number of extensions: 409272
Number of successful extensions: 1322
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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