Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20108
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 33 0.17
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 33 0.17
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 33 0.17
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 33 0.17
AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical... 31 0.68
AF000265-9|AAB52943.2| 449|Caenorhabditis elegans Hypothetical ... 31 0.68
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 30 1.2
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 29 1.6
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 29 1.6
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 29 1.6
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 29 1.6
U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical pr... 29 2.1
U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of ... 28 3.6
AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium cha... 28 3.6
Z81543-3|CAB04425.1| 322|Caenorhabditis elegans Hypothetical pr... 27 6.3
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 27 6.3
AL021469-1|CAA16287.1| 207|Caenorhabditis elegans Hypothetical ... 27 6.3
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 27 6.3
Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical pr... 27 8.4
U00036-16|AAK29860.1| 233|Caenorhabditis elegans Hypothetical p... 27 8.4
AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine rece... 27 8.4
AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine rece... 27 8.4
AF143147-1|AAD37862.1| 233|Caenorhabditis elegans R151.8A prote... 27 8.4
AF100657-4|AAK70655.2| 261|Caenorhabditis elegans Hypothetical ... 27 8.4
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 27 8.4
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 24 9.5
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 429 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 289
S + ++ A + ++HT +GGAT S G+P+ +LART S
Sbjct: 382 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQS 428
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 429 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 289
S + ++ A + ++HT +GGAT S G+P+ +LART S
Sbjct: 395 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQS 441
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 429 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 289
S + ++ A + ++HT +GGAT S G+P+ +LART S
Sbjct: 394 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQS 440
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 429 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 289
S + ++ A + ++HT +GGAT S G+P+ +LART S
Sbjct: 397 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQS 443
>AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical
protein C18G1.1 protein.
Length = 136
Score = 30.7 bits (66), Expect = 0.68
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 204 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 100
+S+ LK Y +KP R TE++ +H+RT + I+L
Sbjct: 45 ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79
>AF000265-9|AAB52943.2| 449|Caenorhabditis elegans Hypothetical
protein C18E3.2 protein.
Length = 449
Score = 30.7 bits (66), Expect = 0.68
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 263 SAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGPV 373
SAP MR PG G PP + R VAPPA P+
Sbjct: 21 SAPQMRRPGGFA------GQPPQMHGPRMVAPPAAPL 51
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +2
Query: 323 PPPLCAGRCVAPPAGPVCAFDAAGT-ARTFATLCELEAVSCRESTYYAVTSLGXC 484
P +C C G V G+ T++ LCEL+ +C+ S+G C
Sbjct: 798 PDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACKHQIDVVPVSMGIC 852
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 247 GASRSQR-TGYESPG*AGPSEGPRGGATAAVCRAVRGPAG 363
GA RS+R GYES G G S G +GG A GP G
Sbjct: 80 GALRSRRQAGYESAGVEGSSVGHQGGCCGCGVSAA-GPPG 118
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 247 GASRSQR-TGYESPG*AGPSEGPRGGATAAVCRAVRGPAG 363
GA RS+R GYES G G S G +GG A GP G
Sbjct: 142 GALRSRRQAGYESAGVEGSSVGHQGGCCGCGVSAA-GPPG 180
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 247 GASRSQR-TGYESPG*AGPSEGPRGGATAAVCRAVRGPAG 363
GA RS+R GYES G G S G +GG A GP G
Sbjct: 80 GALRSRRQAGYESAGVEGSSVGHQGGCCGCGVSAA-GPPG 118
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 247 GASRSQR-TGYESPG*AGPSEGPRGGATAAVCRAVRGPAG 363
GA RS+R GYES G G S G +GG A GP G
Sbjct: 80 GALRSRRQAGYESAGVEGSSVGHQGGCCGCGVSAA-GPPG 118
>U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical
protein C50F2.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 141 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 40
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
>U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical
protein C43E11.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 141 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 40
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
>U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of
potassium channelsprotein 16 protein.
Length = 555
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 353 PRTALHTAAVAPPRGPSLGPAHPGLSYPVR*LLDAPQSR 237
PR+ +H+ P P + P P +P +DAP R
Sbjct: 357 PRSIIHSPCSTRPSNPPMSPPSPREDHPFIFKMDAPAPR 395
>AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium
channel subunit n2P16 protein.
Length = 555
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 353 PRTALHTAAVAPPRGPSLGPAHPGLSYPVR*LLDAPQSR 237
PR+ +H+ P P + P P +P +DAP R
Sbjct: 357 PRSIIHSPCSTRPSNPPMSPPSPREDHPFIFKMDAPAPR 395
>Z81543-3|CAB04425.1| 322|Caenorhabditis elegans Hypothetical
protein F49B2.3 protein.
Length = 322
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 369 GPAGGATHRPAHSGGGT 319
GP G HRP HS G T
Sbjct: 72 GPRGARDHRPRHSAGNT 88
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 253 SRSQRTGYESPG*AGPSEGPRGGATAAVCR-AVRGPAG 363
+RS+R GY G A EG GG + C GPAG
Sbjct: 87 TRSRRGGYAEGG-AAAGEGGGGGGSCCSCGIGAAGPAG 123
>AL021469-1|CAA16287.1| 207|Caenorhabditis elegans Hypothetical
protein Y116A8B.1 protein.
Length = 207
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 369 GPAGGATHRPAHSGGGT 319
GP G HRP HS G T
Sbjct: 70 GPRGARDHRPRHSAGNT 86
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 280 SPG*AGPSEGPRGGATAAVCRAVRGPAG 363
SPG GP GP G A+ C ++GP G
Sbjct: 259 SPGPPGPP-GPPGVCHASQCTGIQGPPG 285
>Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical
protein C02D4.2f protein.
Length = 421
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 171 FVCIVLVTVWIKADCASLP 227
FVCIV+V VWI + S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181
>Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical
protein C02D4.2e protein.
Length = 455
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 171 FVCIVLVTVWIKADCASLP 227
FVCIV+V VWI + S+P
Sbjct: 174 FVCIVIVIVWILSMLISVP 192
>Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical
protein C02D4.2b protein.
Length = 429
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 171 FVCIVLVTVWIKADCASLP 227
FVCIV+V VWI + S+P
Sbjct: 171 FVCIVIVIVWILSMLISVP 189
>Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical
protein C02D4.2a protein.
Length = 432
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 171 FVCIVLVTVWIKADCASLP 227
FVCIV+V VWI + S+P
Sbjct: 174 FVCIVIVIVWILSMLISVP 192
>U00036-16|AAK29860.1| 233|Caenorhabditis elegans Hypothetical
protein R151.10 protein.
Length = 233
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 266 APDMRAPGELVRARVREGVPPPLCAGRC 349
+P M +LVR + GVP LC G C
Sbjct: 88 SPAMPGAEKLVRHLLHTGVPVALCTGSC 115
>AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine
receptor short isoformSER-2a protein.
Length = 421
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 171 FVCIVLVTVWIKADCASLP 227
FVCIV+V VWI + S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181
>AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine
receptor long isoformSER-2 protein.
Length = 444
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 171 FVCIVLVTVWIKADCASLP 227
FVCIV+V VWI + S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181
>AF143147-1|AAD37862.1| 233|Caenorhabditis elegans R151.8A protein
protein.
Length = 233
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 266 APDMRAPGELVRARVREGVPPPLCAGRC 349
+P M +LVR + GVP LC G C
Sbjct: 88 SPAMPGAEKLVRHLLHTGVPVALCTGSC 115
>AF100657-4|AAK70655.2| 261|Caenorhabditis elegans Hypothetical
protein F52C12.2 protein.
Length = 261
Score = 27.1 bits (57), Expect = 8.4
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Frame = +3
Query: 210 DCASLPFIPTRLGSVKKSAHRI*EPRVSWSERGSARGCHRRCVQGGAWPRR----QDQCA 377
DC+ T L VK HR+ V+ + + CH C + A Q+ +
Sbjct: 126 DCSWKEVERTPLHRVKAPEHRLLPYLVAANSVNYGKPCHLTCAEAMAAGLYILGFQEAAS 185
Query: 378 PLMQPERRGHSLLYVNSRLFRVAKARITPSQV 473
LM+P G + +N L + A TP V
Sbjct: 186 RLMKPFSWGDHFIELNKELLDLYAACDTPEDV 217
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 456 YVLSRHETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRT-LARTSSPGA 280
Y + TA+SS ANV ++ A + A + T + A + TPS + +A +P
Sbjct: 2826 YGMPTTSTAASSSSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPST 2885
Query: 279 LI 274
+
Sbjct: 2886 SV 2887
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 24.2 bits (50), Expect(2) = 9.5
Identities = 8/20 (40%), Positives = 8/20 (40%)
Frame = +2
Query: 335 CAGRCVAPPAGPVCAFDAAG 394
C G C PP P C G
Sbjct: 105 CGGGCAPPPPPPACGGGCGG 124
Score = 21.0 bits (42), Expect(2) = 9.5
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = +2
Query: 323 PPPLCAGRC 349
PPP C G C
Sbjct: 57 PPPACGGGC 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,024
Number of Sequences: 27780
Number of extensions: 296606
Number of successful extensions: 1127
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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