Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20108
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    31   0.64 
At5g64090.1 68418.m08049 expressed protein                             29   2.0  
At3g15780.1 68416.m01998 expressed protein                             29   2.0  
At5g53950.1 68418.m06712 no apical meristem (NAM) family protein...    28   3.4  
At2g24530.1 68415.m02930 expressed protein ; expression supporte...    28   3.4  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   3.4  
At1g26810.1 68414.m03267 galactosyltransferase family protein co...    28   4.5  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    27   6.0  
At5g33898.1 68418.m04020 hypothetical protein                          27   7.9  
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    27   7.9  
At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    27   7.9  
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    27   7.9  
At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase, p...    27   7.9  

>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 450 LSRHETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 289
           +S     S SH  ++  A P+ S     P    +H P+HS   TPS + A T S
Sbjct: 188 ISHTPALSPSHATSHSPATPSPSPKSPSPV---SHSPSHSPAHTPSHSPAHTPS 238



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -3

Query: 429 SSSHRVANVLAVPAASKAHT---GPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALT 259
           S SH  A+    P+ S AHT    PA   +H PAH+   +P+   A + SP    S +  
Sbjct: 220 SPSHSPAHT---PSHSPAHTPSHSPAHAPSHSPAHAPSHSPAH--APSHSPAHSPSHSPA 274

Query: 258 S*RSP 244
           + +SP
Sbjct: 275 TPKSP 279



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 393 PAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTS*RSPIS 238
           PA + +H+ PA   +H PAHS   +P+   + + S     S A  S  +P S
Sbjct: 249 PAHAPSHS-PAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPATPSPMTPQS 299


>At5g64090.1 68418.m08049 expressed protein 
          Length = 448

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 447 SRHETASSSHRVANVLAVPAASKAHTG--PAGGATHRPAHSGGGTPSRTLARTSSPGALI 274
           S   ++S+ HR  +V    A + A +G  P+  A   P HS   + S+  +R  S  +L+
Sbjct: 15  SSSTSSSTPHRFKSVTTPTATAAAVSGFSPSAAADRDPMHSWWESVSKQRSRILSLSSLL 74

Query: 273 SG 268
           SG
Sbjct: 75  SG 76


>At3g15780.1 68416.m01998 expressed protein
          Length = 117

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 404 SSPFRLHQRRTLVLPAGPRTALHTAAVAPPRGPSLGPAHP 285
           S P+ LH+R T++L +  R      A  PP  P   P  P
Sbjct: 24  SPPYHLHRRNTVLLASPRRLRRLAVAGGPPSPPGPDPPPP 63


>At5g53950.1 68418.m06712 no apical meristem (NAM) family protein
           identical to no apical meristem protein CUC2
           (GI:1944132) [Arabidopsis thaliana]; contains Pfam
           PF02365: No apical meristem (NAM) domain;
          Length = 375

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 220 VYRSFQRDWGASRS-QRTGYESPG*AGPSEGPRGGATAAVCRAVRGPAGRTSVRL*CSRN 396
           + RS + +W  SR  Q+T   S G    SEG  GG       +  GP+ +T V    SRN
Sbjct: 153 ISRSSKDEWVISRVFQKTTLASTG--AVSEGGGGGGATVSVSSGTGPSKKTKVPSTISRN 210

Query: 397 GED 405
            ++
Sbjct: 211 YQE 213


>At2g24530.1 68415.m02930 expressed protein ; expression supported
           by MPSS
          Length = 252

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 227 VHSNEIGERQEVSAPDMRAP-GELVRARVREGVPPPLCAGRCVAPPAGPVCAFDAAGTAR 403
           V    I  +++++A  MR    +  +ARV   + P       +AP   P C+    G+ R
Sbjct: 41  VEKPRIPNKEKIAAVSMRDDQNQEEQARVNLSMSP------LIAPLGIPFCSASVGGSPR 94

Query: 404 TFATLCELEAVSCRES 451
           T       E +SC +S
Sbjct: 95  TIPVSTNAELISCYDS 110


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 399 AVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 289
           + PA   + T PA GA+  PA  G  TPS   + TSS
Sbjct: 256 STPAFGASST-PAFGASSTPAFGGSSTPSFGASNTSS 291


>At1g26810.1 68414.m03267 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 643

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 449 FRDTKQPRVHIE*RMSSPFRLHQRRTLVLPAGPRTALHTAAVAPPRGPSLGPAHP 285
           FRDT +P +  E R++  FRL       LP    +  H   +   + P+L P  P
Sbjct: 338 FRDTLEPWLVSEIRITGDFRLISILASGLPTSEESE-HVVDLEALKSPTLSPLRP 391


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 362 PAGPRTALHTA-AVAPPRGPSLGPAHPGLSYPV 267
           P+ P + LH+  + APPR     P HP LS  V
Sbjct: 267 PSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDV 299


>At5g33898.1 68418.m04020 hypothetical protein
          Length = 248

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 255 KKSAHRI*EPRVSWSERGSARGCHRRCVQGGA 350
           KK A+   +  VS  ++ +ARG HR C + G+
Sbjct: 32  KKEAYDFIDKAVSRPQKANARGLHRSCRKEGS 63


>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 441 HETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 289
           H+T   +HR+ +V+ VP +      P   +T      G G P R+L+RT+S
Sbjct: 504 HKTRIGAHRIFSVVLVPTS----VCPRPSSTTTDLKKGMGLP-RSLSRTAS 549


>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -1

Query: 320 PPRGPSLGPAHPGLSYPV--R*LLDAPQSRWNE 228
           P +GP   P  PGL +P+        P  RWN+
Sbjct: 262 PSQGPPQPPPSPGLMFPLSPSGFFPMPSPRWND 294


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -1

Query: 320 PPRGPSLGPAHPGLSYPV--R*LLDAPQSRWNE 228
           P +GP   P  PGL +P+        P  RWN+
Sbjct: 369 PSQGPPQPPPSPGLMFPLSPSGFFPMPSPRWND 401


>At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase,
           putative Strong similarity to Arabidopsis 2A6
           (gb|X83096), tomato ethylene synthesis regulatory
           protein E8 (SP|P10967)
          Length = 345

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 415 SSECPRRSGCIKGAHWSCRRGHAPPCTQ 332
           +S+  +  GC+KG H  C   + PPC Q
Sbjct: 183 NSDTLKSMGCMKGLHMICH--YYPPCPQ 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,073,692
Number of Sequences: 28952
Number of extensions: 268071
Number of successful extensions: 874
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)