Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20107
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 141 5e-35
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 141 7e-35
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 141 7e-35
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 96 2e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 86 3e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 71 1e-13
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 34 0.011
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.060
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.56
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 0.74
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 28 0.98
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 0.98
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 28 0.98
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 1.3
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 27 2.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 3.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 3.0
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 6.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 9.1
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 141 bits (342), Expect = 5e-35
Identities = 69/85 (81%), Positives = 75/85 (88%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
Y VT+IDAPGHRDFIKNMITGTSQADCAVLI GTGEFEAGISK+GQTREHALLA+TLG
Sbjct: 85 YNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLG 144
Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEE 256
VKQLIV VNKMD+T + + RFEE
Sbjct: 145 VKQLIVAVNKMDTT--GWSQARFEE 167
Score = 130 bits (313), Expect = 2e-31
Identities = 55/86 (63%), Positives = 68/86 (79%)
Frame = +1
Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
I KE S++ KK+G+NP FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+
Sbjct: 168 IVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLL 227
Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
EA+D+I PPARPTDKPLRLPLQDV K
Sbjct: 228 EAIDSIEPPARPTDKPLRLPLQDVYK 253
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 141 bits (341), Expect = 7e-35
Identities = 68/85 (80%), Positives = 75/85 (88%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
Y VT+IDAPGHRDFIKNMITGTSQADCA+LI GTGEFEAGISK+GQTREHALLA+TLG
Sbjct: 85 YNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLG 144
Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEE 256
VKQLIV VNKMD+T + + RFEE
Sbjct: 145 VKQLIVAVNKMDTT--GWSQARFEE 167
Score = 130 bits (313), Expect = 2e-31
Identities = 55/86 (63%), Positives = 68/86 (79%)
Frame = +1
Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
I KE S++ KK+G+NP FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+
Sbjct: 168 IVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLL 227
Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
EA+D+I PPARPTDKPLRLPLQDV K
Sbjct: 228 EAIDSIEPPARPTDKPLRLPLQDVYK 253
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 141 bits (341), Expect = 7e-35
Identities = 68/85 (80%), Positives = 75/85 (88%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
Y VT+IDAPGHRDFIKNMITGTSQADCA+LI GTGEFEAGISK+GQTREHALLA+TLG
Sbjct: 85 YNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLG 144
Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEE 256
VKQLIV VNKMD+T + + RFEE
Sbjct: 145 VKQLIVAVNKMDTT--GWSQARFEE 167
Score = 130 bits (313), Expect = 2e-31
Identities = 55/86 (63%), Positives = 68/86 (79%)
Frame = +1
Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
I KE S++ KK+G+NP FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+
Sbjct: 168 IVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLL 227
Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
EA+D+I PPARPTDKPLRLPLQDV K
Sbjct: 228 EAIDSIEPPARPTDKPLRLPLQDVYK 253
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.3 bits (229), Expect = 2e-21
Identities = 42/82 (51%), Positives = 57/82 (69%)
Frame = +2
Query: 11 TIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVKQ 190
+++DAPGH+ ++ NMI G SQAD VL+ A GEFEAG + GQTREHA+LA T G+
Sbjct: 319 SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINH 378
Query: 191 LIVGVNKMDSTEPPYXEPRFEE 256
L+V +NKMD + E R++E
Sbjct: 379 LVVVINKMDEPSVQWSEERYKE 400
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 86.2 bits (204), Expect = 3e-18
Identities = 41/79 (51%), Positives = 51/79 (64%)
Frame = +2
Query: 20 DAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 199
DAPGHRDFI MI G S AD AVL+ + FE G +NGQTREHA L LG+ +++V
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 200 GVNKMDSTEPPYXEPRFEE 256
VNK+D + E RF+E
Sbjct: 321 SVNKLDLMS--WSEDRFQE 337
Score = 48.4 bits (110), Expect = 6e-07
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +1
Query: 256 IKKEVSSYX-KKIGYNPAAXXFVPISGWHGDNMLEPSTK--MPWFKGWQVERKEGKADGK 426
IK VS + K +G+ + FVPIS G N+++ + W+KG
Sbjct: 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG------------P 385
Query: 427 XLIEALDAILPPARPTDKPLRLPLQDVSKS 516
L+ ALD ++PP +P KPLRL + DV +S
Sbjct: 386 TLLSALDQLVPPEKPYRKPLRLSIDDVYRS 415
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 70.9 bits (166), Expect = 1e-13
Identities = 35/75 (46%), Positives = 47/75 (62%)
Frame = +2
Query: 17 IDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 196
+D PGH D+IKNMITG + D A+++ A G+ QTREH LLA +GVKQ++
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIV 173
Query: 197 VGVNKMDSTEPPYXE 241
V +NK+D EP E
Sbjct: 174 VYINKVDMVEPDMIE 188
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 34.3 bits (75), Expect = 0.011
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +2
Query: 5 YVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGV 184
+V+ +D PGH + M+ G + D A+L+ AG QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLL-IAGNES-----CPQPQTSEHLAAIEIMQL 162
Query: 185 KQLIVGVNKMDSTEPPYXEPRFE 253
K +I+ NK+D E ++
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQ 185
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 31.9 bits (69), Expect = 0.060
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREH 157
Y + IID PGH DF + D AVL+ A +G I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTG 112
Y + +ID+PGH DF + + + D A ++ A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 14 IIDAPGHRDFIKNMITGTSQADCAVLI 94
IID PGH F GTS + A+L+
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILV 579
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.9 bits (59), Expect = 0.98
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTG 112
Y + +ID PGH DF ++ + + +L+ A G
Sbjct: 124 YLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 27.9 bits (59), Expect = 0.98
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 470 GRAGGRMASRASMRXFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 333
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 27.9 bits (59), Expect = 0.98
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +2
Query: 8 VTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVK 187
+ +ID PGH DF + + D AV I G EA QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG-VEA------QTKVVWKQATKRGIP 147
Query: 188 QLIVGVNKMD 217
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 5 YVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTG 112
++T +D PGH F G + AD VL+ G
Sbjct: 221 FITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 207 TKWIPLNHHTXSPDLRNQEGSILI-HXEDWLQPSCXRFRAH 326
TK++ + H+ + L + ++I H ED L P+C RAH
Sbjct: 438 TKYVHMAHNYLNEKLSPSQAMVIISHYEDEL-PACVNRRAH 477
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLI 94
+ V +ID+PGH DF + D A+++
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLI 94
+ V +ID+PGH DF + D A+++
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 17 IDAPGHRDFIKNMITGTSQADCAVLI 94
ID PGH DF+ + + +D VL+
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLV 239
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 8 VTIIDAPGHRDFIKN 52
+T+ID PG DFI N
Sbjct: 89 LTVIDTPGFGDFINN 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,706
Number of Sequences: 5004
Number of extensions: 41356
Number of successful extensions: 139
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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