Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20107
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   172   2e-45
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   172   2e-45
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   172   2e-45
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   166   1e-43
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    31   0.007

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  172 bits (418), Expect = 2e-45
 Identities = 81/89 (91%), Positives = 84/89 (94%)
 Frame = +2

Query: 2   YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
           YYVTIIDAPGHRDFIKNMITGTSQADCAVLI  AGTGEFEAGISKNGQTREHALLAFTLG
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 71

Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEESRRK 268
           VKQLIVGVNKMDSTEPPY E RFEE +++
Sbjct: 72  VKQLIVGVNKMDSTEPPYSETRFEEIKKE 100



 Score =  145 bits (351), Expect = 3e-37
 Identities = 65/75 (86%), Positives = 67/75 (89%)
 Frame = +1

Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
           IKKEVSSY KKIGYNPAA  FVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GK LI
Sbjct: 97  IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLI 156

Query: 436 EALDAILPPARPTDK 480
           EALDAILPP RPTDK
Sbjct: 157 EALDAILPPTRPTDK 171


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  172 bits (418), Expect = 2e-45
 Identities = 81/89 (91%), Positives = 84/89 (94%)
 Frame = +2

Query: 2   YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
           YYVTIIDAPGHRDFIKNMITGTSQADCAVLI  AGTGEFEAGISKNGQTREHALLAFTLG
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 87

Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEESRRK 268
           VKQLIVGVNKMDSTEPPY E RFEE +++
Sbjct: 88  VKQLIVGVNKMDSTEPPYSETRFEEIKKE 116



 Score =  161 bits (392), Expect = 3e-42
 Identities = 74/86 (86%), Positives = 76/86 (88%)
 Frame = +1

Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
           IKKEVSSY KKIGYNPAA  FVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GK LI
Sbjct: 113 IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLI 172

Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
           EALDAILPP RPTDK LRLPLQDV K
Sbjct: 173 EALDAILPPTRPTDKALRLPLQDVYK 198


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  172 bits (418), Expect = 2e-45
 Identities = 81/89 (91%), Positives = 84/89 (94%)
 Frame = +2

Query: 2   YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
           YYVTIIDAPGHRDFIKNMITGTSQADCAVLI  AGTGEFEAGISKNGQTREHALLAFTLG
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 144

Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEESRRK 268
           VKQLIVGVNKMDSTEPPY E RFEE +++
Sbjct: 145 VKQLIVGVNKMDSTEPPYSETRFEEIKKE 173



 Score =  161 bits (392), Expect = 3e-42
 Identities = 74/86 (86%), Positives = 76/86 (88%)
 Frame = +1

Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
           IKKEVSSY KKIGYNPAA  FVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GK LI
Sbjct: 170 IKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLI 229

Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
           EALDAILPP RPTDK LRLPLQDV K
Sbjct: 230 EALDAILPPTRPTDKALRLPLQDVYK 255


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  166 bits (404), Expect = 1e-43
 Identities = 78/89 (87%), Positives = 82/89 (92%)
 Frame = +2

Query: 2   YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
           YYVTIIDAPGHRDFIKNMITGTSQADCAVLI  AG GEFEAGISKNGQTREHALLAFTLG
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLG 144

Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEESRRK 268
           VKQLIVGVNKMD T+PPY E RFEE +++
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKE 173



 Score =  157 bits (382), Expect = 5e-41
 Identities = 71/86 (82%), Positives = 76/86 (88%)
 Frame = +1

Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
           IKKEVSSY KKIGYN A+  FVPISGWHGDNMLEPS K PW+KGW+VERK+G ADGK LI
Sbjct: 170 IKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLI 229

Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
           EALDAILPP+RPTDK LRLPLQDV K
Sbjct: 230 EALDAILPPSRPTDKALRLPLQDVYK 255


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 31.1 bits (67), Expect = 0.007
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +2

Query: 8   VTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVK 187
           VT +D PGH  FI     G    D  VL+  A  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 188 QLIVGVNKMDSTEPPYXEPRFE 253
            +IV +NK+D       + ++E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYE 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,831
Number of Sequences: 438
Number of extensions: 2866
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)