Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20106
         (611 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    26   0.29 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    26   0.29 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   0.88 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   0.88 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   0.88 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   0.88 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   0.88 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   0.88 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   0.88 
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    24   1.2  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    23   1.5  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    23   1.5  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   3.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   3.5  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    21   6.2  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    21   6.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.2  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
 Frame = +3

Query: 51  LAEEDSCYQNVDQGCRRTL----SLPHCSAYYGQFKD 149
           L E      NVD G R  L    S PHC   YG F D
Sbjct: 68  LTENCDYIHNVDCGDRTQLEPPISSPHCERLYGIFAD 104


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
 Frame = +3

Query: 51  LAEEDSCYQNVDQGCRRTL----SLPHCSAYYGQFKD 149
           L E      NVD G R  L    S PHC   YG F D
Sbjct: 68  LTENCDYIHNVDCGDRTQLEPPISSPHCERLYGIFAD 104


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 PWTRRSSLPRGFSSSTGKVTKNRTSSTMPRSLNTSR 548
           PW +R  L +   ++ G+  + RTS T  ++L   +
Sbjct: 202 PWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEK 237


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 PWTRRSSLPRGFSSSTGKVTKNRTSSTMPRSLNTSR 548
           PW +R  L +   ++ G+  + RTS T  ++L   +
Sbjct: 202 PWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEK 237


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 PWTRRSSLPRGFSSSTGKVTKNRTSSTMPRSLNTSR 548
           PW +R  L +   ++ G+  + RTS T  ++L   +
Sbjct: 202 PWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEK 237


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 PWTRRSSLPRGFSSSTGKVTKNRTSSTMPRSLNTSR 548
           PW +R  L +   ++ G+  + RTS T  ++L   +
Sbjct: 202 PWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEK 237


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 PWTRRSSLPRGFSSSTGKVTKNRTSSTMPRSLNTSR 548
           PW +R  L +   ++ G+  + RTS T  ++L   +
Sbjct: 158 PWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEK 193


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 PWTRRSSLPRGFSSSTGKVTKNRTSSTMPRSLNTSR 548
           PW +R  L +   ++ G+  + RTS T  ++L   +
Sbjct: 202 PWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEK 237


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 PWTRRSSLPRGFSSSTGKVTKNRTSSTMPRSLNTSR 548
           PW +R  L +   ++ G+  + RTS T  ++L   +
Sbjct: 202 PWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEK 237


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
          protein 17 protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 9  KVYALIVACLALGVLAEEDSCYQNVD 86
          KV  ++ AC+   V AEE +  QN+D
Sbjct: 3  KVLFVVFACVQAYVYAEEYTVPQNID 28


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 520 VEEVLFLVTFPVDEENPLGKLLLRVQGFGQGS 425
           +EE+  L++  + E+NP  K+LL + G+ +GS
Sbjct: 78  LEELAHLMS--LKEKNPNVKILLSMGGWNEGS 107


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 520 VEEVLFLVTFPVDEENPLGKLLLRVQGFGQGS 425
           +EE+  L++  + E+NP  K+LL + G+ +GS
Sbjct: 78  LEELAHLMS--LKEKNPNVKILLSMGGWNEGS 107


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 483 STGKVTKNRTSSTMPRSLNTSR 548
           +TGK   N  S ++PR  + SR
Sbjct: 186 NTGKTQYNLNSKSLPRQYSQSR 207


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 123 SAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYFNNYQT 251
           S Y  Q    H++   +    + YL   Y  +L    FNNYQ+
Sbjct: 481 SNYTKQQSKIHLIVRSV--FVTTYLMFDYCTVLRVQRFNNYQS 521


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
          protein 16 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 12 VYALIVACLALGVLAEEDSCYQNVD 86
          V+ L +ACL   V ++E    QN+D
Sbjct: 5  VFLLALACLKTYVSSQEYLVPQNID 29


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
          protein 9 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 12 VYALIVACLALGVLAEEDSCYQNVD 86
          V+ L +ACL   V ++E    QN+D
Sbjct: 5  VFLLALACLKTYVSSQEYLVPQNID 29


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 436 QSLGHAEAACREDFLHPQGKSLK 504
           +S  H E+   E F+HP    LK
Sbjct: 86  RSFTHVESPIDEKFVHPHRFRLK 108


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 505 FLVTFPVDEENPLGKLLLRVQGFGQ 431
           F + + V    P GKLL+ V  +GQ
Sbjct: 848 FTMEYLVSRGAPRGKLLVGVPFYGQ 872


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,494
Number of Sequences: 336
Number of extensions: 2526
Number of successful extensions: 21
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)