Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20106
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 42 3e-04
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 34 0.077
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 32 0.31
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 30 1.7
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 29 2.9
01_03_0257 - 14301138-14301500,14301609-14301684,14301725-14302446 28 5.1
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 28 6.7
07_03_0512 - 18954515-18955972 28 6.7
07_03_0399 + 17714058-17714163,17714282-17714406,17714868-177149... 27 8.9
06_03_1223 - 28526869-28527192,28527515-28527634,28527742-285278... 27 8.9
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/106 (26%), Positives = 53/106 (50%)
Frame = +2
Query: 257 EGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALA 436
+GFAK F++ SD+ + L+K+ RGG++ S T + E G + A+
Sbjct: 124 KGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDH---PEKGDALYAME 180
Query: 437 KALDTQKQLAERIFFIHRESH*KQDLLHDAEITQYIEEEFVSXQAD 574
AL +K + E++ +H + +D ++T ++E EF+ Q +
Sbjct: 181 LALALEKLVNEKLHNLHSVA----SRCNDPQLTDFVESEFLEEQVE 222
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 141 FKDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNGKDSRSSSGNYRT 293
F D+ ++ + L++ S+ R+ AS F+ Y+ NGK+SR GNY +
Sbjct: 360 FSDSSIIPSMLRS-PSVDSNRNDEMTTEASNFDPYKVNGKESRRDIGNYHS 409
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 257 EGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 373
+GFAK F++ SD+ + LIK+ RGG++ S T
Sbjct: 156 KGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVT 194
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 186 SLYLKRSYHYLLSASYFNNYQTNGKDSRSSSGNYRTIRGRKPLVS*STSLRGVGRWTS 359
S YL S HY+LSAS+ + T+ + G ++ P SL G WTS
Sbjct: 3004 SYYLPISAHYVLSASHLDEEDTSCSQGTLNPGEVVRVQNVDPRNPLYLSLVPHGGWTS 3061
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +2
Query: 176 GISLTVFETFLPLSP--VGLLLQQLPDEREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGK 349
G + VF+ + + P V + PD E + KL ++S + +G + R +
Sbjct: 491 GYCIDVFDEVMKIMPYPVSYVYDPYPDSPESYEKLVDQVSSQKADAVVGDVTITASRMEE 550
Query: 350 MDFSSHTTLKG 382
+DF+ T G
Sbjct: 551 VDFTMPFTESG 561
>01_03_0257 - 14301138-14301500,14301609-14301684,14301725-14302446
Length = 386
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 180 LASLYLKRSYHYLLSASYFNNYQTNGKDSRSSSG 281
+ASLY+ R+ L + NNYQ N ++ + SG
Sbjct: 284 MASLYIPRANKNLDPVAILNNYQRNCNEAHNYSG 317
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 26 RCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 178
+ ++G G +GRG ++ + PR + +A +R L +G +C + G
Sbjct: 87 KAVTGGGRSGRGLVVCCQMAPRRGGGERRSAQRRRLERRKGGDQCDDELSG 137
>07_03_0512 - 18954515-18955972
Length = 485
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 225 PTGDNGRNVSNTVR---LMPSVRSLQRGCP*IGRNTRCSAADLKSVC 94
P G +G+ + V L +VRSL +GR R AA++K+VC
Sbjct: 408 PLGVDGKRRDSFVEAAELERAVRSLMDDASEVGRKVREKAAEMKAVC 454
>07_03_0399 +
17714058-17714163,17714282-17714406,17714868-17714983,
17715058-17715151,17715255-17715319,17716295-17716400,
17716776-17716805,17716877-17716990,17717741-17717803
Length = 272
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 206 LPLSPVGLLLQQLPDEREGFAKLF----RKLSDDSWEKTIGLIKHVTKRGGK-MDFSSHT 370
L L V + + ++ +G A L +KLS+D+WEK + L + K F T
Sbjct: 175 LTLEKVNIAINEVASYADGNAHLVACPKKKLSEDTWEKALELRDIAARESVKGRHFFLET 234
Query: 371 TLKG 382
+KG
Sbjct: 235 DIKG 238
>06_03_1223 -
28526869-28527192,28527515-28527634,28527742-28527816,
28527905-28527964,28528271-28528370,28528664-28529148,
28529243-28529437,28529532-28529762,28529851-28529967,
28530247-28530330,28530755-28530893,28530939-28531090
Length = 693
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 231 YFNNYQTNGKDSRSSSGNYRTI 296
YF+ Y NGK+ R GNY ++
Sbjct: 423 YFDPYNVNGKEVRRDIGNYCSV 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,645
Number of Sequences: 37544
Number of extensions: 333435
Number of successful extensions: 952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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