Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20106
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46266-4|CAA86414.2|  787|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AB011285-1|BAA24965.1|  275|Caenorhabditis elegans GAP-2-9 protein.    30   1.5  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    29   2.6  
L23651-12|AAA27958.1|  305|Caenorhabditis elegans Collagen prote...    29   3.5  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    28   6.0  

>Z46266-4|CAA86414.2|  787|Caenorhabditis elegans Hypothetical
           protein ZK899.8g protein.
          Length = 787

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 147 DNHVVANELKALA-SLYLKRSYHYLLSASYFNNYQTNGKDSRSSSGNYRTIRGRKPLVS* 323
           +N+ + N LK    S  LK++Y  +  +S F  Y  N   S S +    +  G K     
Sbjct: 39  ENNKIKNVLKNFIWSFKLKKNY--VRVSSLFGEYTVNTSHSDSGTSRIASALGGKSSSQE 96

Query: 324 STSLRGVGRWTS 359
           S SLR   RW S
Sbjct: 97  SPSLRIKARWQS 108


>AB011285-1|BAA24965.1|  275|Caenorhabditis elegans GAP-2-9 protein.
          Length = 275

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 147 DNHVVANELKALA-SLYLKRSYHYLLSASYFNNYQTNGKDSRSSSGNYRTIRGRKPLVS* 323
           +N+ + N LK    S  LK++Y  +  +S F  Y  N   S S +    +  G K     
Sbjct: 39  ENNKIKNVLKNFIWSFKLKKNY--VRVSSLFGEYTVNTSHSDSGTSRIASALGGKSSSQE 96

Query: 324 STSLRGVGRWTS 359
           S SLR   RW S
Sbjct: 97  SPSLRIKARWQS 108


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 59  GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 154
           GRLML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 26/101 (25%), Positives = 45/101 (44%)
 Frame = +2

Query: 266 AKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKAL 445
           AK F++ SD+  E    L++    RGG++        + D       E G  + A   AL
Sbjct: 48  AKFFKEQSDEEREHATELMRVQNLRGGRVVLQDIQKPEND-------EWGTALKAFEAAL 100

Query: 446 DTQKQLAERIFFIHRESH*KQDLLHDAEITQYIEEEFVSXQ 568
             +K   E +  +H  +       +DA +T +IEE+++  Q
Sbjct: 101 ALEKFNNESLLKLHSTA----GNHNDAHLTDFIEEKYLDEQ 137


>L23651-12|AAA27958.1|  305|Caenorhabditis elegans Collagen protein
           90 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 185 LTVFETFLPLSPVGLLLQQLPDEREGFAKLFRKLSDDSWEKTIGL 319
           L V  +   +S +   +  L DE EG    F+ L+DD+W++ + L
Sbjct: 14  LGVLSSLFSISHIVRDINSLRDEVEGRVDEFKVLADDTWQRLLVL 58


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 422 IGALAKALDTQKQ----LAERIFFIHRESH*KQDLLHDAEITQYIEEE 553
           +GAL   ++  K+    + E I  + RE+H   D LH A I Q +E+E
Sbjct: 161 LGALEAEIELLKRRISLMEESIGHLKRENHRMIDSLHHARIFQAVEQE 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,494
Number of Sequences: 27780
Number of extensions: 256832
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)