Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20106
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    31   0.80 
At1g68670.1 68414.m07846 myb family transcription factor contain...    29   3.2  
At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase, pu...    28   4.2  
At3g20580.1 68416.m02605 phytochelatin synthetase-related contai...    28   4.2  
At3g25790.1 68416.m03210 myb family transcription factor contain...    27   7.4  
At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing...    27   7.4  
At4g34820.1 68417.m04941 expressed protein                             27   9.8  
At4g10430.3 68417.m01715 expressed protein                             27   9.8  
At4g10430.2 68417.m01713 expressed protein                             27   9.8  
At4g10430.1 68417.m01714 expressed protein                             27   9.8  
At3g30420.1 68416.m03847 hypothetical protein low similarity to ...    27   9.8  
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    27   9.8  
At1g33230.1 68414.m04106 expressed protein                             27   9.8  
At1g16750.1 68414.m02011 expressed protein contains Pfam profile...    27   9.8  
At1g13300.1 68414.m01544 myb family transcription factor contain...    27   9.8  

>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +2

Query: 173 EGISLTVFETFLP-LSPVGLLLQQLPDEREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGK 349
           E +SL+  ++ L  +     +L++L  + +G      + SDDSWEK  G++  V   GG 
Sbjct: 605 EDVSLSREDSLLDEMLDASWILKKLGKDAKGKKVQIHEASDDSWEK--GVVSEVGGAGG- 661

Query: 350 MDFSSHTTLKGDKGSNYTVEVGHE 421
              +S   +  + G   TVE+G +
Sbjct: 662 ---TSKLMVTLENGKVKTVELGKQ 682


>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 155 RCSERTEGI-SLTVFETFLPLSPVGLLLQQLPDERE 259
           +CSE+T  +    VFE F+P+  +  L +++ +E E
Sbjct: 63  QCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEEE 98


>At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase,
           putative / FK506-binding protein, putative similar to
           rof1 [Arabidopsis thaliana] GI:1373396
          Length = 578

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 293 DSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQ 460
           + WEK   L +   K   +++    T +    G  +TV+ GH   AL+KA+ T K+
Sbjct: 173 EKWEKPKDLDEVYVKYEARLE--DGTIVGKSDGVEFTVKEGHFCPALSKAVKTMKR 226


>At3g20580.1 68416.m02605 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region; supporting cDNA gi|26452232|dbj|AK118605.1|
          Length = 672

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = -2

Query: 589 RLRXRIGLXTHEFLLDVLSDLGIVEEVL------FLVTFPVDEENPLGKL 458
           +++ +IGL T +F      DL IV +VL      +L    +D +NPLG+L
Sbjct: 212 KIKNKIGLKT-KFAPRRYGDLNIVYDVLQSFDSNYLAQVTIDNDNPLGRL 260


>At3g25790.1 68416.m03210 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 357

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 140 IQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDERE 259
           + GQ  CSE+T G    + + F+P+      +++  D+++
Sbjct: 65  LYGQSECSEQTTGECGRILDLFIPIKHSSTSIEEEVDDKD 104


>At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing
           protein low similarity to NUC-2 [Neurospora crassa]
           GI:1399532, xenotropic and polytropic murine leukemia
           virus receptor [Mus musculus castaneus] GI:6093320;
           contains Pfam profile PF03105: SPX domain
          Length = 287

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 284 LSDDSWEKTIGLIKHVTK 337
           L DDSW+K +G+++ V K
Sbjct: 270 LEDDSWKKKVGVLEQVAK 287


>At4g34820.1 68417.m04941 expressed protein 
          Length = 321

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 371 TLKGDKGSNYTVEVGHEIGALAKALD 448
           T +G+K  + T  VG EIGAL + LD
Sbjct: 233 TPEGEKTIDLTGRVGQEIGALLRRLD 258


>At4g10430.3 68417.m01715 expressed protein
          Length = 347

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +2

Query: 116 ALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEREGFAKLF---RKL 286
           AL  +   I+GQP C ++  G+ L  F  +  +  V +LLQ     +  + ++     K 
Sbjct: 198 ALVSLTWEIKGQPNCVQKQRGVHL--FLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKR 255

Query: 287 SDDSWEKTIGL 319
            D  W +T G+
Sbjct: 256 MDVVWGETAGV 266


>At4g10430.2 68417.m01713 expressed protein
          Length = 271

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +2

Query: 116 ALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEREGFAKLF---RKL 286
           AL  +   I+GQP C ++  G+ L  F  +  +  V +LLQ     +  + ++     K 
Sbjct: 122 ALVSLTWEIKGQPNCVQKQRGVHL--FLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKR 179

Query: 287 SDDSWEKTIGL 319
            D  W +T G+
Sbjct: 180 MDVVWGETAGV 190


>At4g10430.1 68417.m01714 expressed protein
          Length = 347

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +2

Query: 116 ALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEREGFAKLF---RKL 286
           AL  +   I+GQP C ++  G+ L  F  +  +  V +LLQ     +  + ++     K 
Sbjct: 198 ALVSLTWEIKGQPNCVQKQRGVHL--FLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKR 255

Query: 287 SDDSWEKTIGL 319
            D  W +T G+
Sbjct: 256 MDVVWGETAGV 266


>At3g30420.1 68416.m03847 hypothetical protein low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 837

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +2

Query: 251 EREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYT 403
           ERE  A LF KL++        ++K VT + GK+ F     L GD G+  T
Sbjct: 338 ERETHANLFSKLNEQQRIIYDDVLKSVTNKEGKLFF-----LYGDGGTGKT 383


>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 23/106 (21%), Positives = 44/106 (41%)
 Frame = +2

Query: 257 EGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALA 436
           +GFAK F   S +        +++  KRGG++   S      +       E G  + A+ 
Sbjct: 122 KGFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKLQSILMPVSEFDHE---EKGDALHAME 178

Query: 437 KALDTQKQLAERIFFIHRESH*KQDLLHDAEITQYIEEEFVSXQAD 574
            AL  +K   E++  +           +D ++  ++E EF+  Q +
Sbjct: 179 LALSLEKLTNEKLLKLQSVGVKN----NDVQLVDFVESEFLGEQVE 220


>At1g33230.1 68414.m04106 expressed protein
          Length = 347

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 140 IQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEREGFAKLF---RKLSDDSWEKT 310
           I+GQP C ++ +G+ L  F  +  +  V +LLQ     +  + ++     K  D  W +T
Sbjct: 207 IKGQPNCVQKQKGVRL--FLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGET 264

Query: 311 IGL 319
            G+
Sbjct: 265 AGV 267


>At1g16750.1 68414.m02011 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 529

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +2

Query: 323 KHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHRESH* 502
           K+VTK     +F+   + K  K  +Y  E+ H++  L   L  +  +   +     +SH 
Sbjct: 23  KNVTK-----EFNGRDSPKNSKFHHYRFELEHDVKRLKNQLQKETAMRALLLKASDQSH- 76

Query: 503 KQDLLHDAEITQYIEE 550
           K +L H + + + ++E
Sbjct: 77  KIELSHASSLPRSVQE 92


>At1g13300.1 68414.m01544 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 146 GQPRCSERTEGISLTVFETFLPL 214
           GQP CSE+T G    V E FL +
Sbjct: 66  GQPECSEQTTGECGPVLEQFLTI 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,779,954
Number of Sequences: 28952
Number of extensions: 252754
Number of successful extensions: 810
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)