Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20105
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.13 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.52 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.52 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.52 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.4  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 542 SRCQTYMNACTSQPDPNAGTDKEL 613
           S CQT +N C S P  N GT  +L
Sbjct: 179 SYCQTEINECDSAPCQNGGTCLDL 202



 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 545 RCQTYMNACTSQPDPNAGT 601
           RC+  +N C S P  NAGT
Sbjct: 294 RCEGDINECLSNPCSNAGT 312



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 542 SRCQTYMNACTSQPDPNAGT 601
           S CQ  +N C S P  N  T
Sbjct: 56  SNCQNRINLCDSSPCLNGAT 75



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 548 CQTYMNACTSQPDPNAGTDKEL*DGH 625
           C++ +N C + P  N G    +  GH
Sbjct: 335 CESKVNFCATSPCQNGGVCTTIHAGH 360


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 441 RTDRDHQQEEALYQVNMYIDQLVCPCTTT 527
           RTDR H Q+      NMY  ++  P  TT
Sbjct: 295 RTDRKHTQQHYQMNQNMYPGEMYNPEHTT 323


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 441 RTDRDHQQEEALYQVNMYIDQLVCPCTTT 527
           RTDR H Q+      NMY  ++  P  TT
Sbjct: 243 RTDRKHTQQHYQMNQNMYPGEMYNPEHTT 271


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 441 RTDRDHQQEEALYQVNMYIDQLVCPCTTT 527
           RTDR H Q+      NMY  ++  P  TT
Sbjct: 426 RTDRKHTQQHYQMNQNMYPGEMYNPEHTT 454


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 563 NACTSQPDPNAGTD 604
           N+CT + DPN   D
Sbjct: 141 NSCTVETDPNRALD 154


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 563 NACTSQPDPNAGTD 604
           N+CT + DPN   D
Sbjct: 148 NSCTVETDPNRAPD 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,142
Number of Sequences: 336
Number of extensions: 3247
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)