Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20105
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   1.7  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   1.7  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.2  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   2.9  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    27   2.9  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   3.9  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   5.1  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    26   5.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   5.1  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   6.8  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   6.8  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.0  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   9.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.0  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
 Frame = +3

Query: 246 SSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSE--LLLDISE-C--DKDDITRYADRIL 410
           S+ +  +R+++D +    E+ S+ +  D I  SE   +L+  E C  D D+I++  +   
Sbjct: 190 SAELEWKRVQQDQLTSASER-SIENIADDIPASEPKAILENGEGCLNDNDNISKLKNNFQ 248

Query: 411 SRAMTVEVTVRTDRDHQQEEALYQVNMYID 500
           S+A  ++  + +  D   +++     +Y+D
Sbjct: 249 SQADLMQANINSKLDELSQKSTRAAQLYVD 278


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
 Frame = +3

Query: 291 IEEEKDSLLSTLDSIKHSELLLDIS---------------ECDKDDITRYADRILSRAMT 425
           + E KDS  S LD+++HS  L DIS               E  KD    Y  R L + + 
Sbjct: 683 VSELKDSKNSLLDALEHS--LQDISMSSQKLGNGISSELIELQKDMKESY--RQLVQELR 738

Query: 426 VEVTVRTDRDHQQEEALYQVNMYIDQLVCPCTTT 527
               ++   +  Q+E +Y V   ID LV  CTT+
Sbjct: 739 SLYNLQHTHEESQKELMYGVRNDIDALVKTCTTS 772


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 222 RQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDS 332
           +Q DS+ +SSR  VE L      +EEE +S+    DS
Sbjct: 138 QQKDSTLKSSRAAVEELAGRYCLLEEELNSIAKKGDS 174


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 207 NAGAERQTDSSTRSSRMRVE--RLRKDTVRIEEEKDSLLSTLDSIKH 341
           N   ++ T    + S++++E  RLRK+ + ++ E+  LL  L+ ++H
Sbjct: 350 NVNIKQITTLIGKMSQVQIECKRLRKENLFLQSERTHLLRELEELRH 396


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 238 LLSVCLSAPAFLEPRIRR*GVVVNPLDTQSLMQ 140
           LL+  L AP    PR+RR   ++  +DT+S+ +
Sbjct: 270 LLTAALDAPYHDSPRVRRQDYLLGLIDTRSMSE 302


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 240 TRSSRMRVERLRKDTVRIEEEK--DSLLSTLDSIKHSELLLDISECDKDDITRYADRILS 413
           TRS R ++ + R++ +R+ E+K  + LL T+D        L      KD   +++++ +S
Sbjct: 274 TRSQRNKIRQRREEELRLLEQKKNEELLRTIDKAPAISKKLQ----QKDKAEKFSNKAVS 329

Query: 414 RAMT 425
            + T
Sbjct: 330 SSTT 333


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 204  RNAGAERQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKH 341
            ++A ++RQT SS R+S    E  ++DT R++ E  +       IKH
Sbjct: 1123 QSANSKRQT-SSHRTSYWDTEAEKRDTERMQAETQAEQRVARVIKH 1167


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
 Frame = +3

Query: 240 TRSSRMRVERLRKDTVRIEEEKDSL----LSTLDSIKHSEL-LLDISECDKDDITRYADR 404
           ++S   +V  L KD  ++E  K       L    S K+ E+   ++S  D  +   + D 
Sbjct: 60  SKSESAQVTLLLKDIQKVERSKSRTFCFKLRFKSSTKNFEIQACELSVADNMECYEWMDL 119

Query: 405 ILSRAMTVEVTVRTDRDHQQEEALYQVNMYI 497
           I SRA+  +V+   +  HQ    +     Y+
Sbjct: 120 ISSRALASKVSSPMNPKHQVHVGIDNEGNYV 150


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 279 DTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVE 431
           +T   EEE   LLST D+I     LL+  E  +D    +   +L     +E
Sbjct: 459 ETDEEEEESQYLLSTKDAINAINTLLNFQEQSEDGNVLFTRTLLQFQKVLE 509


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 117 SNYGGGSICIRDCVSRGFT--TTPHRRILGSRNAGAERQTDSSTRSSRMRVERLRKDTVR 290
           SN    S  + D +S   T  T P    L +     +   +S + S+++ V R   +TV+
Sbjct: 84  SNISSESAILEDMISANATDFTVPQTN-LETTGIAFQLTVNSLSSSNQLSVIRSSTNTVK 142

Query: 291 IEEEKDSLLSTLDSIKHSELLLD 359
             ++  +  S  + I H   LLD
Sbjct: 143 GRKKNPTTNSNWNGISHVNALLD 165


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 485 HLIQSFLLLMVSVSAHCHLYG 423
           HLI++  L ++S   HCH  G
Sbjct: 118 HLIKTVFLQLISAVEHCHSVG 138


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +3

Query: 225 QTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADR 404
           Q D++   +   +  +R    +IEE KD+L   L SI  +      +  D  D+  YA R
Sbjct: 156 QIDATNAEALQTLASMRISQQKIEEAKDALSKCLQSISRA------ATEDSVDLPTYAVR 209

Query: 405 ILSRAMTVEVTVRTDRDHQ 461
                + +EV +  +  HQ
Sbjct: 210 TSIVRLLIEVEMH-EEAHQ 227


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 201 SRNAGAERQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLD-SIKH 341
           S+N   E   D+   S  M V+    D+  +   KDS +   D SI+H
Sbjct: 159 SKNTAEETVVDTDIDSGDMDVDSKSSDSFLLSVGKDSFMKLWDLSIQH 206


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 485 EHVHRSAGMSVHNDAVSAHSRCQTYMNACTS 577
           E+++ +   S+HN  +S +S   T+MN   S
Sbjct: 441 ENINNNMFGSIHNTTLSLNSTLNTFMNELNS 471


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 208 TQAPKDRLIAVLDQVECEWRGSEKTQSGLKKKR 306
           T A    L   L++   +WR S+K++ G+K+K+
Sbjct: 40  TPAQSGNLEKQLNERARKWRASQKSKFGVKRKQ 72


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +3

Query: 156  VSRGFTTTPHRRILGSRNAGAERQTD--SSTRSSRMRVERLRKDTVRIEEEKDSLLSTLD 329
            VS   + + +  ++  R+  A R +D   S   S   +  +R D VR+ +E D+L    D
Sbjct: 1158 VSLEQSNSNNEALVEERSDLANRLSDMKKSLSDSDNVISVIRSDLVRVNDELDTLKKDKD 1217

Query: 330  SI--KHSELLLD 359
            S+  ++SE+  D
Sbjct: 1218 SLSTQYSEVCQD 1229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,880
Number of Sequences: 5004
Number of extensions: 51146
Number of successful extensions: 157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)