Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20105
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0703 + 22282219-22282430,22286054-22287620,22287751-222883... 30 1.3
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796... 29 2.3
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 29 2.3
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 29 3.0
07_03_0605 + 19908541-19909605,19909703-19910092 29 3.0
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 29 3.0
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 3.0
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581... 29 3.0
10_05_0092 - 9106725-9106769,9107172-9107367,9107525-9107898 29 4.0
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159... 29 4.0
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 29 4.0
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 28 7.0
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467 28 7.0
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419... 28 7.0
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 27 9.2
>12_02_0703 +
22282219-22282430,22286054-22287620,22287751-22288371,
22288434-22288484
Length = 816
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/88 (25%), Positives = 41/88 (46%)
Frame = +3
Query: 234 SSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILS 413
+ST S+ ++ +L D +E KD+ L + L +D SE + I + +D ++
Sbjct: 484 TSTADSKEKITKLLVDIFFTKENKDASTRQLAGEALAMLSVDQSESNAAIIFKASDTVVD 543
Query: 414 RAMTVEVTVRTDRDHQQEEALYQVNMYI 497
T + VRT ++ A ++YI
Sbjct: 544 DLKTTLLDVRTKSGYRISAAEILKHLYI 571
>12_01_1064 -
10978039-10978190,10978731-10978865,10979217-10979605,
10979669-10979892,10980011-10980172,10980256-10980906,
10981583-10981804
Length = 644
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/62 (27%), Positives = 22/62 (35%)
Frame = +2
Query: 398 GPHPVPGYDRRGDSAH*PRPSAGGSSVSGEHVHRSAGMSVHNDAVSAHSRCQTYMNACTS 577
GP P P + DS H P S H+H + +S N R T A +
Sbjct: 438 GPQPQPASHSQPDSQHGPVASPTSEEAQDHHIHNTPDISPTNSPAPQPCRIITLDVAFNT 497
Query: 578 QP 583
P
Sbjct: 498 TP 499
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 380 RYHTIRGPHPVPGYDRRGDSAH*PRPSAGGSSVSGEHVHRSAGMSVHND 526
R HTIR + G+ +R +SAH A G+ S + + GM+V D
Sbjct: 152 RMHTIRQTSGLAGFPKRDESAH----DAFGAGHSSTSISAALGMAVARD 196
>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
Length = 266
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 452 RPSAGGSSVSGEHVHRSAGMSVHNDAVSAHSRC 550
RP ++V+G H + G S DA S HS C
Sbjct: 127 RPLNAAAAVAGHHHLAAGGSSCSPDATSGHSSC 159
>07_03_0605 + 19908541-19909605,19909703-19910092
Length = 484
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 584 PAETCTRSYRSGNGNAHSLRRCARTYQLIDVHVHL 480
PAE T RS GN H +C + +D H +L
Sbjct: 68 PAECRTAIIRSIEGNGHGHAQCIESRFFVDAHAYL 102
>04_04_0298 +
24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 291 IEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTDR 452
I +EK +L +++ IKH E++L E KDD T D +V + V +R
Sbjct: 639 IRDEKVKVLQSVNPIKHDEVVLGQYEGYKDDPTVPDDSNTPTFASVVLRVHNER 692
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTV 440
E+DS + S SEL+ +IS+ +++DIT D I + E+ V
Sbjct: 466 EQDSKIQEAVSASDSELISEISDVEQEDITDKGDVIDDGFLAEELNV 512
>01_05_0080 -
17957276-17957676,17957810-17957921,17958001-17958126,
17958199-17958331,17960069-17960193,17960314-17960409,
17960430-17960621,17960694-17960800,17961318-17961426,
17961538-17961624,17963017-17963103,17964254-17964379
Length = 566
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 407 PVPGYDRRGDSAH*PRPSAGGSSVSGEHVHRSAGMSVHNDAVSAHSRCQTYMNACTSQPD 586
P+PG G S P PS +S SG+ V +A + D S H++ + + + D
Sbjct: 477 PMPG-TMDGFSTQLPNPSMTQTSSSGQLVESTASGVIRRDQGSNHTQRVSTVLRLAWKED 535
Query: 587 PNAG 598
NAG
Sbjct: 536 QNAG 539
>10_05_0092 - 9106725-9106769,9107172-9107367,9107525-9107898
Length = 204
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 97 RFSESASQTMEVDQFALEIAYPEGSRLPLIDESSVLGTQAPKDRLIA 237
+F A+ ++F + +YP G L+D+ + T P D ++A
Sbjct: 50 QFVAGANHPNRNEEFVIASSYPNGFGTTLVDDWYLTATTNPNDNIVA 96
>08_02_1416 -
26915306-26915459,26915553-26915668,26915798-26915910,
26915995-26916130,26916219-26916338,26916472-26916648,
26916790-26916862,26916948-26917083,26917179-26918055,
26918138-26918331,26918438-26918620,26918730-26918796,
26918900-26919092,26919317-26919363,26919478-26919574,
26919663-26919790,26919905-26920009,26920763-26920879
Length = 1010
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +3
Query: 309 SLLSTLDSIKHSELLLDISECDK---DDITRYADRILSRAMT 425
S +S L S ELL S CDK DDITR A IL T
Sbjct: 433 STISPLPSKPSGELLRFFSACDKDVTDDITRRAGIILGAIFT 474
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 211 QAPKDRLIAVLDQVECEWRGSEKTQSGLKKKRTPYF 318
Q KDR+ + EW G+++ ++G KR P++
Sbjct: 5 QHSKDRMFITRTEWATEWGGAKQKEAGTPFKRLPFY 40
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +3
Query: 219 ERQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYA 398
E + D+ + + R ++R RK+ ++ + L + + HSE+ +SE K + ++
Sbjct: 386 EHRHDTESSARRRSIKRSRKEFNATQQPEGMLPEDSEDVSHSEMNTPLSELCKSSGSNHS 445
Query: 399 DRILS 413
+ S
Sbjct: 446 PKSCS 450
>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
Length = 640
Score = 27.9 bits (59), Expect = 7.0
Identities = 23/79 (29%), Positives = 28/79 (35%)
Frame = +1
Query: 127 EVDQFALEIAYPEGSRLPLIDESSVLGTQAPKDRLIAVLDQVECEWRGSEKTQSGLKKKR 306
E+ QF A PL+D AP + D V W+ S+K S LK
Sbjct: 380 ELAQFLWGCASLNECPYPLLDALDTACRDAPSFDC-HLHDTVPGMWQSSDKEASSLKNSS 438
Query: 307 TPYFQL*TASNIQNCYWIY 363
Y T I N W Y
Sbjct: 439 NAYALNFTRDQIGNIAWSY 457
>02_01_0570 -
4195409-4195443,4196245-4196333,4196539-4196630,
4196726-4196833,4196984-4197118,4197211-4197256,
4197358-4197458,4198285-4198422,4198503-4198601,
4198740-4198856,4199195-4199356,4199734-4199793,
4200371-4200538,4200608-4200718,4201401-4201499,
4201579-4201644,4202407-4202490,4202563-4202605,
4202684-4202739,4202817-4202925,4203442-4203524,
4203842-4203925,4204311-4204382,4204462-4204539,
4204633-4204716,4204806-4204876,4205943-4206012,
4206495-4206626,4207168-4207284,4208185-4208367
Length = 963
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 154 AYPEGSRLPLIDESSVLGTQAPKDRLIAV 240
AY + R + D+ SV+G +P D+L+ V
Sbjct: 630 AYSDAEREAVADQISVMGRSSPSDKLLLV 658
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 274 EKT--QSGLKKKRTPYFQL*TASNIQNCYWIYRSVIRTISHDTRTAS 408
EKT + G K+K P ++ T ++Q+ YW S+ HD R AS
Sbjct: 661 EKTTAKKGRKRKVMPSPEVETTDHMQDSYWSGLSLHNHPIHDLRRAS 707
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,163,105
Number of Sequences: 37544
Number of extensions: 382034
Number of successful extensions: 1074
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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