Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20105
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31706| Best HMM Match : Tropomyosin (HMM E-Value=2.7) 33 0.25
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 32 0.33
SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8) 30 1.8
SB_11059| Best HMM Match : KID (HMM E-Value=0.046) 30 1.8
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 29 2.3
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_47446| Best HMM Match : DUF16 (HMM E-Value=4.1) 29 2.3
SB_41535| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_25121| Best HMM Match : Hc1 (HMM E-Value=0.12) 29 4.1
SB_24734| Best HMM Match : Hexapep (HMM E-Value=2.9) 29 4.1
SB_23181| Best HMM Match : Hexapep (HMM E-Value=4.5e-09) 29 4.1
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_41321| Best HMM Match : Hexapep (HMM E-Value=0.01) 28 5.4
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 28 5.4
SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24) 28 5.4
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 28 5.4
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21) 28 5.4
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05) 28 5.4
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036) 28 7.1
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 28 7.1
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1) 28 7.1
SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072) 28 7.1
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_42889| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 9.4
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0) 27 9.4
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 27 9.4
SB_43087| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2) 27 9.4
SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5) 27 9.4
>SB_31706| Best HMM Match : Tropomyosin (HMM E-Value=2.7)
Length = 275
Score = 32.7 bits (71), Expect = 0.25
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Frame = +3
Query: 204 RNAGAERQTDSSTRSSRMRVERLRKDTVR---IEEEKDSLLSTLDSIKHSELLLDISECD 374
+ GAER+ +STR++ + +RLR R + +++ + + L ++H +L+ D C+
Sbjct: 47 KRQGAERRLHNSTRAANILRDRLRIRQERLALVHQQRATAEARLQILRHDKLVND-EACN 105
Query: 375 KDDITRYADRILSRAMTVEV-TVRTDRDHQQEEALY 479
+I+ + R + VE+ V D + +EE +
Sbjct: 106 NLEISHKQEPERRRKLQVELYRVIRDNERIKEETAF 141
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 219 ERQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIK 338
ER+ ++ ++S+MRV + I +++DSL LDS+K
Sbjct: 1175 ERRFENEMQASKMRVSKFEAQAHSIVKQRDSLREQLDSVK 1214
>SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8)
Length = 988
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/21 (52%), Positives = 19/21 (90%)
Frame = +3
Query: 297 EEKDSLLSTLDSIKHSELLLD 359
E +DSL+S++D+++HSE+L D
Sbjct: 575 EAQDSLVSSMDTLRHSEMLND 595
>SB_11059| Best HMM Match : KID (HMM E-Value=0.046)
Length = 296
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/94 (23%), Positives = 41/94 (43%)
Frame = +3
Query: 186 RRILGSRNAGAERQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDIS 365
+R L ++ E Q D+ T ++ +E L ++ + ++ S S I+ E L +
Sbjct: 140 KRALQDQDQVMEEQQDALTER-QLEIESLTEELRTLTDQNTSTNSLSAEIRRLEGTLSVY 198
Query: 366 ECDKDDITRYADRILSRAMTVEVTVRTDRDHQQE 467
+KD + R D + +EV+ T Q E
Sbjct: 199 IKEKDQLQRELDALRKTEAGIEVSKLTTTSSQVE 232
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/99 (26%), Positives = 42/99 (42%)
Frame = +3
Query: 189 RILGSRNAGAERQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISE 368
RI R ER+ + R R+E +R+ R EEE+ L L+ + E L + E
Sbjct: 607 RIARERALERERERERERERERRRLEYMREQRRRQEEERARLQRELERRRELERLRVLRE 666
Query: 369 CDKDDITRYADRILSRAMTVEVTVRTDRDHQQEEALYQV 485
+ + +R R V R +R+ + E L +V
Sbjct: 667 RREREERERLER-ERREREVLERERLERERAERERLQRV 704
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/104 (22%), Positives = 42/104 (40%)
Frame = +3
Query: 171 TTTPHRRILGSRNAGAERQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSEL 350
T TP R + R++ E ++ LR+ R+EE + L + + +L
Sbjct: 167 TITPFRHVASPRSSQLESLQRELAEKHESQLNELREQRARLEELQQQLSAEQAKQREQQL 226
Query: 351 LLDISECDKDDITRYADRILSRAMTVEVTVRTDRDHQQEEALYQ 482
LL+ +K + L +A E R R +++E L +
Sbjct: 227 LLE----EKQKTVTEEQQKLIQAQIDEQRERQKRLQEEQERLQE 266
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +3
Query: 258 RVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISE 368
RV+++ D +R + ++L+S ++ I+HS L + ISE
Sbjct: 1492 RVDKVIVDQLREHSKVETLVSRIERIRHSPLHISISE 1528
>SB_47446| Best HMM Match : DUF16 (HMM E-Value=4.1)
Length = 371
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 219 ERQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELL-LDISECDKD---DI 386
E S S ++ + E+K+S+ +T D+ SE++ D+++CDK I
Sbjct: 258 ETDVTQSDESQTKAIKSVAPSDTSQSEDKESI-ATYDADTQSEVMDTDVTQCDKSLSKAI 316
Query: 387 TRYADRILSRAMTVEVTVRTDRDHQQE 467
A S++ VE V++D + Q E
Sbjct: 317 RSVAPSDTSQSEEVESIVQSDDNTQSE 343
>SB_41535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTD 449
+KD+LL +D + LL D+ + DKD + D + + +V V D
Sbjct: 23 DKDTLLDNVDVVDGDTLLDDVDDVDKDTLLDDVDVVDKETLLDDVDVVED 72
>SB_25121| Best HMM Match : Hc1 (HMM E-Value=0.12)
Length = 320
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 270 LRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITR 392
LRKDTV+ E+ + T+ + K + L +D + +K D+ R
Sbjct: 24 LRKDTVKAEKGNVLRIDTVKAEKGNVLRIDTVKAEKGDVLR 64
>SB_24734| Best HMM Match : Hexapep (HMM E-Value=2.9)
Length = 459
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTD 449
+KD+LL +D + LL D+ + DKD + D + + +V V D
Sbjct: 23 DKDTLLDNVDVVDGDTLLDDVDDVDKDTLLDDVDVVDKDTLLDDVDVVED 72
>SB_23181| Best HMM Match : Hexapep (HMM E-Value=4.5e-09)
Length = 782
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTD 449
+KD+LL +D + LL D+ + DKD + D + + +V V D
Sbjct: 23 DKDTLLDNVDVVDGDTLLDDVDDVDKDTLLDDVDVVDGDTLLDDVDVVED 72
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 264 ERLRKDTVRIEEEKDSLLSTLDSIKH 341
ERL+KD +++E SL LD++KH
Sbjct: 1177 ERLKKDNSALQKEVSSLKIQLDALKH 1202
>SB_41321| Best HMM Match : Hexapep (HMM E-Value=0.01)
Length = 1171
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTD 449
+KD+LL +D + LL D+ + DKD + D + + +V V D
Sbjct: 217 DKDTLLDDVDVVDGDTLLDDVDDVDKDTLLDDVDVVDKDTLLDDVDVVDD 266
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTV 440
+KD+LL +D + LL D+ + DKD + D + + +V V
Sbjct: 181 DKDTLLDDVDVVDGDTLLDDVDDVDKDTLLDDVDVVDKDTLLDDVDV 227
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTV 440
+KD+LL +D + LL D+ + DKD + D + + +V V
Sbjct: 356 DKDTLLDDVDIVDGDTLLDDVDDVDKDTLLDDVDVVDKDTLLDDVDV 402
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 542 SRCQTYMNACTSQPDPNAGTDKEL*DGH 625
+RC+T ++ C S P N GT K+ +G+
Sbjct: 446 NRCETEIDECESSPCQNGGTCKDKINGY 473
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 536 AHSRCQTYMNACTSQPDPNAGTDKEL*DGH 625
A + C+ +N C SQP N G+ +++ +G+
Sbjct: 1058 AGANCEESINECLSQPCKNGGSCRDIVNGY 1087
>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
Length = 1102
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 210 AGAERQTDSSTRSSRMRVERLRKDTVRIEEEK 305
A +RQ D R++ + RLR++ R+ EEK
Sbjct: 433 AEVDRQLDEERRTNTTSLARLREEIARLREEK 464
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 237 STRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADR 404
S ++ L + VR+E++K +L +TLD I+ +L D + D DR
Sbjct: 1782 SVAAAEQEKRELERAHVRLEKDKKALRNTLDKIEREKLETDETNTRLRDDRERLDR 1837
>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
Length = 1332
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +2
Query: 455 PSAGGSSVSGEHVHRSAGMSVHNDAVSAHSRCQTYMNACTSQPDPNAGTDKE 610
P G V + G S A RC+ ++ C SQP N GT K+
Sbjct: 390 PDCARCDHGGTCVDKVNGFSCRCPAGYTGRRCEVDIDDCASQPCQNGGTCKD 441
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 168 FTTTPHRRILGSRNA--GAERQTDSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLDSIKH 341
F T RR+ G+ N + T+ R++ +L+++ VR+ +EK+ + L ++
Sbjct: 2849 FCETRTRRVTGTLNEVYSEKEDTEEELNVERVKSAKLQRELVRVCKEKEEMDKELKRLQS 2908
Query: 342 SE 347
E
Sbjct: 2909 EE 2910
>SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
Length = 1482
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTD 449
+KD+LL +D + LL D+ + DKD + D + + +V V D
Sbjct: 23 DKDTLLDDVDVVDGDTLLDDVDDVDKDTLLDDVDVVDKDTLLDDVDVVED 72
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTD 449
+KD+LL +D + LL D+ + DKD + D + + V V D
Sbjct: 645 DKDTLLDDVDIVDGDTLLDDVDDVDKDTLIDDVDVVDKDTLLDNVDVVED 694
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 300 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTV 440
+KD+LL +D + L+ D+ + DKD + D + + +V V
Sbjct: 1202 DKDTLLDDVDIVDGDTLIDDVDDVDKDTLLDDVDVVKDVGLLEDVDV 1248
>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
Length = 1211
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 234 SSTRSSRMRVERLRKDTVRIEEEKDSLLSTL-DSIKHSEL 350
SSTR+S + L+K+ + +EKD L + + DS++ E+
Sbjct: 1064 SSTRNSSDEADLLKKEIQTLHKEKDELNAFIKDSVRKQEM 1103
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 548 CQTYMNACTSQPDPNAGTDKEL*DGH 625
C+T ++ C S P N GT +L D H
Sbjct: 1513 CETDIDECASSPCANGGTCTDLVDAH 1538
>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 601
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 255 MRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITR 392
++ ++ ++ +EEEKD L + LDS +E L +S C +D + R
Sbjct: 321 VKADQYKQHIADLEEEKDQLQNELDS--QTEELRQVSLCLEDAMKR 364
>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 513
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 255 MRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITR 392
++ ++ ++ +EEEKD L + LDS +E L +S C +D + R
Sbjct: 12 VKADQYKQHIADLEEEKDQLQNELDS--QTEELRQVSLCLEDAMKR 55
>SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072)
Length = 416
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 234 SSTRSSRMRVERLRKDTVRIEEEKDSLLSTL-DSIKHSEL 350
SSTR+S + L+K+ + +EKD L + + DS++ E+
Sbjct: 221 SSTRNSSDEADLLKKEIQTLHKEKDELNAFIKDSVRKQEM 260
>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 264 ERLRKDTVRIEEE-KDSLLSTLDSIKHSELLLDISE---CDKDDITRYADRILSRAMTVE 431
E DT+ +E +D LL + K E LL S+ D+I R A+ +L++ V+
Sbjct: 456 ESCEXDTITPDEILRDRLLFGIHDTKVRERLLRESKLTLAKTDEICRAAESMLAQMKIVK 515
Query: 432 VTVRTDRDHQQEE 470
T TD + Q+E
Sbjct: 516 DTSETDVNAMQQE 528
>SB_42889| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 336
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 282 CLFGASPLAFDLI*YCYQSVFRRLRS*NRGF 190
C++ A P+ LI YCY SVFR + N+ F
Sbjct: 194 CVYIACPIL--LIGYCYSSVFREVYRTNKVF 222
>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
Length = 1264
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +3
Query: 135 SICIRDCVSRGFTTTPHRRILGSRNAGAERQTDSSTRSSRMRVERLRKDTVRIEEEKDSL 314
S I D + + + H L + AG R+ + R SRM+ + + RI +
Sbjct: 972 SASIDDVIKQTPQISVHEYQLLQKEAGQLRRDLQAARQSRMKAPPVAESIKRIIRGEPYS 1031
Query: 315 LSTLDSIKHSELLLDIS 365
L S+K LLD++
Sbjct: 1032 LELYKSLKEKVELLDVA 1048
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 545 RCQTYMNACTSQPDPNAGTDKEL*DG 622
+C+T +N C S P N GT +L +G
Sbjct: 1180 KCETDINECASNPCVNGGTCTDLVNG 1205
>SB_43087| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)
Length = 134
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 213 GAERQT--DSSTRSSRMRVERLRKDTVRIEEEKDSLLSTLD-SIKHSE 347
G E+Q D S+ S+ +++ RK+ + EKD ++S L I+H E
Sbjct: 74 GTEQQNKLDISSASTEEELQKTRKERDDMRREKDQIISELKFKIEHME 121
>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
Length = 563
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = -3
Query: 611 VLCRCPRWGPAETCTRSYRSGNGNAHSLRRCARTYQLIDVHVHLIQSFLLLMVSVSAHCH 432
+L RC G A T T + + ++ R + H H + + VS+S CH
Sbjct: 112 LLMRCHTHG-AVTRTVTLLKALSHVSAVTRTVTLLRRCHTHGHFFKGAVTRTVSLSRRCH 170
Query: 431 LYG 423
YG
Sbjct: 171 TYG 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,708,278
Number of Sequences: 59808
Number of extensions: 425222
Number of successful extensions: 1288
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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