Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20105
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27130.1 68418.m03238 MADS-box family protein various predict...    31   0.47 
At4g09960.1 68417.m01629 MADS-box protein (AGL11)                      31   0.83 
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta...    28   4.4  
At1g77122.1 68414.m08984 expressed protein                             28   4.4  
At1g20430.1 68414.m02546 expressed protein                             28   4.4  
At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1) domain...    28   5.8  
At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    27   7.7  
At3g07530.1 68416.m00899 expressed protein ; expression supporte...    27   7.7  

>At5g27130.1 68418.m03238 MADS-box family protein various predicted
           MADS box proteins, Arabidopsis thaliana
          Length = 306

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 258 RVERLRKDTVRI--EEEKDSLLSTLDSIKHSELLLDISECDKDDITRYA 398
           R++R++K  +    +EEK  L+S+ D   +S   LD+ +CD    ++ A
Sbjct: 126 RLQRMKKHVMACLEKEEKSQLVSSFDQNPNSTCSLDVEDCDGSSYSQIA 174


>At4g09960.1 68417.m01629 MADS-box protein (AGL11)
          Length = 230

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 276 KDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTDRD 455
           K+  ++E   +  +S + S KH  LL++I    K +I    + I  R    EV  R  + 
Sbjct: 122 KELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVE-RYQQH 180

Query: 456 HQQEEALYQVN 488
           H Q  +  ++N
Sbjct: 181 HHQMVSGSEIN 191


>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 738

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +2

Query: 404 HPVPGYDRRGDSAH*PRPSAGGSSVSGEHVHRSAGMSVHNDAVSAHSRCQTYMNACTSQP 583
           HPV GY ++ +  +      G S+   +     AG SV +           Y ++C S P
Sbjct: 513 HPVYGYLQKAEPVNLQFGLFGISAWPSDGATSRAG-SVDDCKADMAETSSRYYSSCCSSP 571

Query: 584 DPNAGTDKEL 613
             + GT KEL
Sbjct: 572 RMSEGTSKEL 581


>At1g77122.1 68414.m08984 expressed protein 
          Length = 323

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query: 165 GFTTTPHRRILG-SRNAGAERQTDSSTRSSRM-RVERLRKDTVRIEEEKDSLLSTLDSIK 338
           GF  TP RR    +    A+R+  +ST   +  +VE L  +    EEE++ ++   +  +
Sbjct: 42  GFPATPFRRTPNFTFKTHAKRKNKTSTFEPKPNKVEELIIEEEEEEEEEEEIVLPEEIQE 101

Query: 339 HS-ELLLDISECDKDD 383
           +  ELLLD  E D+DD
Sbjct: 102 NQDELLLD-DEYDEDD 116


>At1g20430.1 68414.m02546 expressed protein
          Length = 116

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 246 SSRMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELL 353
           S + R+  L +DT  +++E+DSL   +  IK S+LL
Sbjct: 58  SQKYRIHDLEEDTAVLKKEQDSLTDRMSKIK-SDLL 92


>At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein contains Pfam profile PF00564:
           PB1 domain
          Length = 513

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 229 VCLSAPAFLEPRIRR*GVVVNPLDTQSLMQ 140
           V L  P F +PR+ +   VVNP++ Q  MQ
Sbjct: 220 VALEPPLFNDPRVIQPDHVVNPMEIQRQMQ 249


>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 216 AERQTDSSTRSSRMRVERLRKDTV-RIEEEKDSLLSTLDSIKHSELLLDISECDKDDITR 392
           +E +T    ++  ++ E+     V R+ EEK  LLS L+S K  E   + S+   + +  
Sbjct: 415 SELETVKEEKNRALKKEQDATSRVQRLSEEKSKLLSDLESSKEEE---EKSKKAMESLAS 471

Query: 393 YADRILSRAMTVEVTVRTDRDHQQEEALYQVNMYI 497
               + S    ++  + +  DH+ E  +  + + I
Sbjct: 472 ALHEVSSEGRELKEKLLSQGDHEYETQIDDLKLVI 506


>At3g07530.1 68416.m00899 expressed protein ; expression supported
           by MPSS
          Length = 699

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 291 IEEEKDSLLSTLDSIKHSELLLDISEC 371
           I + KDSLL+T DS++  E L  +  C
Sbjct: 310 ISDNKDSLLNTEDSLEEMEKLAFVCSC 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,468
Number of Sequences: 28952
Number of extensions: 284807
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)