Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20104
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 116 2e-27
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 106 2e-24
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 54 1e-08
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.11
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.4
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 27 1.8
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 1.8
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 27 2.4
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 3.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.2
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 5.6
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 25 7.4
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 7.4
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 25 7.4
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.7
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 9.7
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 9.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.7
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 116 bits (280), Expect = 2e-27
Identities = 55/84 (65%), Positives = 71/84 (84%)
Frame = +2
Query: 8 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 187
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 188 YGLVVAVLIAGALQEPANYPLYKG 259
YGLVV+VLI+G L++ + LY G
Sbjct: 67 YGLVVSVLISGNLKQILS--LYSG 88
Score = 116 bits (278), Expect = 4e-27
Identities = 57/64 (89%), Positives = 60/64 (93%)
Frame = +1
Query: 256 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 435
GFI LGAGL+VG +GLAAGFAIGIVGDAGVRGTAQQPRLFV MILILIFAEVLGLYGLIV
Sbjct: 88 GFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIV 147
Query: 436 AIYL 447
A+ L
Sbjct: 148 ALLL 151
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 106 bits (255), Expect = 2e-24
Identities = 47/84 (55%), Positives = 63/84 (75%)
Frame = +2
Query: 8 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 187
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 188 YGLVVAVLIAGALQEPANYPLYKG 259
YGLV++VLIAG + +Y L+ G
Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLFSG 90
Score = 96.7 bits (230), Expect = 3e-21
Identities = 45/64 (70%), Positives = 54/64 (84%)
Frame = +1
Query: 256 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 435
GFIHL AGLAVG +G+AAG+AIG+VGD GV+ +Q R+FV M+LILIFAEVLGLYGLIV
Sbjct: 90 GFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIV 149
Query: 436 AIYL 447
+ L
Sbjct: 150 GLIL 153
Score = 32.7 bits (71), Expect = 0.049
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 232 ASQLPPLQGFIHLGAGLAVG--FSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFA 405
+S L P+ AG+ FS L AG+ + G A +P + + ++ ++ +
Sbjct: 2 SSNLCPIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMS 61
Query: 406 EVLGLYGLIVAIYL 447
++G+YGL++++ +
Sbjct: 62 GIIGVYGLVMSVLI 75
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +2
Query: 26 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 205
+G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 206 VLIAGALQE--PANY 244
++ + + + PA +
Sbjct: 105 IVFSAKINDINPAGF 119
Score = 53.6 bits (123), Expect = 2e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = +1
Query: 256 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 435
GF G+ VG L G +GI G + AQ LFV ++++ IF VLGL+GLIV
Sbjct: 128 GFALFWGGITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIV 187
Query: 436 AIYL 447
+ +
Sbjct: 188 GLLI 191
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 268 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 441
LG V F + A + I I G + + G + PR+ ++ +IF EV+ +Y LI+AI
Sbjct: 48 LGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAI 105
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.11
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 425 P*RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNP 255
P RP ++A ++ PT +VP P++P MP P+A P A AP NP
Sbjct: 1691 PVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -1
Query: 453 CVQVDGDD-KSV--KTQYFSENKNKNHSDE*PRLLSSTT 346
C++VD +D K + K+QY +EN N N + P L S+TT
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNTT 270
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 356 AVPRTPAS--PTMPMAKPAARPENPTAKPAP 270
A P P S P++PM PAA P P+A AP
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 372 IRRNDSYSYFR*SIGSLRTYRRHLPVHKINALNTHHSRRPCSEP 503
I +D + F S+G ++ + + P HK+ L+ +S +P S+P
Sbjct: 76 INADDDLTEFYKSLGEIQEFHKKYPDHKVEDLSQLYSIKP-SQP 118
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +2
Query: 11 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 190
+YGPF+ A+ FS Y +G G + S+ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 191 GLVVAVLIAGAL 226
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 660 ATRLHRSGXYVKTSREQMYXQEWKGAPKPYARWTRYRRRPSLC 532
A+ + +SG Y+ T+ + + WK P R T + P C
Sbjct: 191 ASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSC 233
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 23 FFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKSIIPVVMAGIIAIYGL 196
F+G ++G + F+ + + ++ G S LI+ S+ P+V++ IIA +
Sbjct: 1439 FYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMSVAPLVLSAIIAFFFF 1498
Query: 197 VVAVLIAGALQEPA-NYPLY 253
+ +++ L + + Y +Y
Sbjct: 1499 CLGIMLRPILGDRSKTYGVY 1518
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = -2
Query: 356 AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPCKGGSWLAPGGHQQSGQP 201
+VP+ PA P +P A P P P + P GG A Q + P
Sbjct: 678 SVPQPPAVPVVPEAGQLNEPVVPPLPPHDETQEPQVGGDVKATEHTQPTKTP 729
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -2
Query: 356 AVPRTPASPTMPMA----KPAARPENPTAKPAPK 267
+VP+ PA+P +P A +P A P P AP+
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = -2
Query: 344 TPASPTMPMAKPAARPENPTAKPAPK---WMNPCKGGSWLAPGGHQQSGQPR 198
TPAS T+P++ P PAP NP G + + SG R
Sbjct: 297 TPASATVPISPARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIR 348
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 558 RYRRRPSLCASSDSDNDIEARSTG 487
R R P L SS+ D+ +EARS+G
Sbjct: 1640 RKRLMPCLLQSSELDSKLEARSSG 1663
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 152 IIPVVMAGIIAIYGLVVAVLIAGAL 226
II +AG+IA + +++ IAG +
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVI 217
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 528 SSDSDNDIEARSTGDGSGVCSGRLFCVQVDGDD 430
SSD+D D + G G+ + + L VDG+D
Sbjct: 186 SSDNDEDPNDTTVGIGAALAASILSVDSVDGED 218
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 7.4
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -1
Query: 642 SGXYVKTSREQMYXQEWKGAPKPYARWT-RYRRRPSLCASSDSDNDIEARSTGDGSGVCS 466
SG Y +++ Y + AR + +YR++ S S++ D +I + T + S CS
Sbjct: 62 SGPYRRSTTSYGYSPYSSSSSNYSARHSDKYRKKISRSYSTEKDIEIFSNDTHEKSIACS 121
Query: 465 GRLFCVQVDG 436
R V DG
Sbjct: 122 DRQ-VVYADG 130
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 331 PRCLWRNRQPDQRILQPNQ 275
PRCLW +Q +++PN+
Sbjct: 582 PRCLWTGKQVFTVLMKPNR 600
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +1
Query: 184 HLRSGRGCPDCWCPPGASQLPPLQGFIHLGA 276
HL+ P C P A ++ L F+H A
Sbjct: 112 HLKHSTKAPKCSLPTSALEIDHLNNFLHSSA 142
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.0 bits (52), Expect = 9.7
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 250 LQGFIHLGAGLAVGFSGLAAGFAIGIVGD-AGVRGTAQQPRLFVGMIL-ILIFAEVLG 417
L G + +A+G +GLA G IG+ G A A LF G+ L +I A LG
Sbjct: 163 LSGTRKMRRRIAMGLAGLAGGALIGLTGGLAAPFVAAGLGTLFAGLGLGTMIGATYLG 220
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 410 YWVFTDLSSPSTCTQNKRPEHTPLPSP 490
YW +T +SP+ +N R P P P
Sbjct: 497 YWYYTVFNSPTIIEKNFRQSVGPKPIP 523
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,993
Number of Sequences: 5004
Number of extensions: 61960
Number of successful extensions: 211
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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