Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20104
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 1e-30
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 33 0.21
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12) 31 0.63
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 30 1.5
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 30 1.5
SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_58150| Best HMM Match : ig (HMM E-Value=3.7e-24) 29 2.6
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 2.6
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 2.6
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 29 2.6
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 29 3.4
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 3.4
SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046) 29 3.4
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069) 29 4.5
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 29 4.5
SB_14418| Best HMM Match : GRP (HMM E-Value=1.8) 29 4.5
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 5.9
SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06) 28 5.9
SB_20117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 28 5.9
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 5.9
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 28 5.9
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_1610| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 28 7.8
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 28 7.8
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 130 bits (313), Expect = 1e-30
Identities = 66/85 (77%), Positives = 74/85 (87%)
Frame = +2
Query: 2 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 181
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64
Query: 182 AIYGLVVAVLIAGALQEPANYPLYK 256
AIYGLVVAVLI ++ + +Y LYK
Sbjct: 65 AIYGLVVAVLIGSSISK--DYTLYK 87
Score = 116 bits (279), Expect = 2e-26
Identities = 57/65 (87%), Positives = 61/65 (93%)
Frame = +1
Query: 253 QGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 432
+ F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI
Sbjct: 87 KSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 146
Query: 433 VAIYL 447
VA+ L
Sbjct: 147 VALIL 151
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = -2
Query: 392 IRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPCKGGSWLAPGGHQQ 213
++I+P N + PR P + T P P P PT P P P + PG +
Sbjct: 205 VKILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVPPTNPPAPPTNPPKPGTCKA 264
Query: 212 SG 207
SG
Sbjct: 265 SG 266
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 478 WCVF---RAFILCTGRWRR*VRKDPILQRK*E*ESFRRIT*AAEQYHARLHLP 329
WCV+ R+ I CT RW R V P + + +S RR+ E + L+ P
Sbjct: 933 WCVYHMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRLASQQESQQSLLNAP 985
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 271 GAGLAVGFSGLAAGFAIGIVG 333
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12)
Length = 640
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 549 RRPSLCASSDSDNDIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKNHSD 376
++ S C SSD D +++ R+ + + R + DD SV ++ EN N + +D
Sbjct: 511 QQSSSCGSSDDDWNVDLRTFNNNKNRSNQRQRRLTTSSDDNSVTSETGLENPNADQAD 568
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 534 CASSDSDNDIEARSTGD-GSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKNHSDE*PRLL 358
C SD DND+ GD SG CS F + S++ + + + H D+ +
Sbjct: 167 CRGSDYDNDVNESDNGDYRSGDCSLHSFIIIFQAACYSIERILEALHLRRRHLDDLWKAR 226
Query: 357 SSTTHACI 334
T CI
Sbjct: 227 KKTLEQCI 234
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 344 TPASPTMPMAKPAARPENPTAKPAPKWMNPCKG 246
TPA PT+PMA A + P+ PA P G
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPLTG 1127
>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -1
Query: 558 RYRRRPSLCASSDSDNDIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSEN 397
RY ++ +D D D + S GDG G G DGDD S Y S N
Sbjct: 111 RYNAAAAVNEDNDDDGDGDGDSDGDGDGDGDG-----DGDGDDGSPAVFYLSRN 159
>SB_58150| Best HMM Match : ig (HMM E-Value=3.7e-24)
Length = 456
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -1
Query: 588 GAPKPYARWTRYRRRPSLCASSDSDNDIEARSTGDGSGVCSGRLFC--VQVDGDDKSVKT 415
G PKP+ +WTRY R D+D + + + SG + C + G DK +
Sbjct: 47 GLPKPFVKWTRYGVRAMSNERQLIDSDSDTLTMVEVLPYDSGEVSCTVTNLRGSDKKTSS 106
>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 729
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -2
Query: 347 RTPASPTMPMAKPAARPENPTAKPAPKWMNPCKGGSWLAPGGHQQSGQPRPDRRW 183
+ P +P M M KP A P AKP KGG GG ++G + W
Sbjct: 352 KKPENPLMAMKKPVAPAAKPEAKPQWAQTKLKKGGG----GGADEAGGKKERPGW 402
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 341 PASPTMPMAKPAARPENPTAKPAPK 267
PA+P P A PAA P PTA PA +
Sbjct: 52 PAAPVTPTAAPAA-PVTPTAAPAAR 75
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 341 PASPTMPMAKPAARPENPTAKPA 273
PA+P P A PAAR PTA PA
Sbjct: 62 PAAPVTPTAAPAAR-VTPTAAPA 83
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 154 HSCRHGGYYCHLRSGRGCPDCW 219
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 341 PASPTMPMAKPAARPENPTAKPAPK 267
PA+P P A PAA P PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 341 PASPTMPMAKPAARPENPTAKPA 273
PA+P P A PAAR PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 329 TMPMAKPAARPE-NPTAKPAPKWMNPCKGGSWLAPGGHQQSGQPRP 195
T P A+P RP N A+P P + A GGH Q +P+P
Sbjct: 1899 TQPQAQPKPRPRTNRPAQPVPARRQSPRVPE--ASGGHPQKPEPKP 1942
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = -2
Query: 350 PRTPASPTMPMAKPAARPENPTAKPAPKWMNPCKGGSWLAPGGHQQ 213
P TP PT P A P+W KG W GGH +
Sbjct: 715 PDTPVPPTQPPVTDAPAHCKDIYSDCPEW----KGWGWCNDGGHDE 756
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -2
Query: 350 PRTPASPTMPMAKPAARPENPTAKPAPKWMNPCKGGSWLAPGGHQQ 213
P TP PT P A T PKW KG W G H +
Sbjct: 790 PDTPVPPTQPPVTDAPANCKDTYSGCPKW----KGYGWCNDGDHDK 831
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 380 PTNNLGC*AVPRTPASP--TMPMAKPAARPENPTAKPAP 270
P+NN G A P TPA+P M +A P+ T P P
Sbjct: 87 PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125
>SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046)
Length = 811
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Frame = -2
Query: 374 NNLGC*AVPRTPAS---PTMPMAKPAARPENPTAKPAPK--WMNPCKGGSWLAPGGHQQS 210
NN P PAS P P + P +P NP + P P NP P + S
Sbjct: 539 NNPSSNPKPNNPASNPKPNNPSSNP--KPNNPASNPKPNNPSSNPKSNNPSSNPKPNNPS 596
Query: 209 GQPRPD 192
PRP+
Sbjct: 597 SNPRPN 602
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -2
Query: 377 TNNLGC*AVPRTPAS---PTMPMAKPAARPENPTAKPAPK--WMNPCKGGSWLAPGGHQQ 213
+NN P PAS P P + P +P NP++ P P NP P +
Sbjct: 652 SNNPSSNPKPNNPASNPKPNNPSSNP--KPNNPSSNPKPNNPASNPKPNNPASNPKPNNP 709
Query: 212 SGQPRPD 192
S P+P+
Sbjct: 710 SSNPKPN 716
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = -2
Query: 374 NNLGC*AVPRTPAS---PTMPMAKPAARPENPTAKPAPK--WMNPCKGGSWLAPGGHQQS 210
NN P PAS P P + P +P NP++ P P NP P + S
Sbjct: 350 NNPASNPKPNNPASNPKPNNPSSNP--KPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPS 407
Query: 209 GQPRPD 192
P+P+
Sbjct: 408 SNPKPN 413
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = -2
Query: 374 NNLGC*AVPRTPAS---PTMPMAKPAARPENPTAKPAPK--WMNPCKGGSWLAPGGHQQS 210
NN P PAS P P + P +P NP++ P P NP P + S
Sbjct: 404 NNPSSNPKPNNPASNPKPNNPSSNP--KPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPS 461
Query: 209 GQPRPD 192
P+P+
Sbjct: 462 SNPKPN 467
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = -2
Query: 374 NNLGC*AVPRTPAS---PTMPMAKPAARPENPTAKPAPK--WMNPCKGGSWLAPGGHQQS 210
NN P PAS P P + P +P NP++ P P NP P + S
Sbjct: 503 NNPASNPKPNNPASNPKPNNPSSNP--KPNNPSSNPKPNNPSSNPKPNNPASNPKPNNPS 560
Query: 209 GQPRPD 192
P+P+
Sbjct: 561 SNPKPN 566
>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
Length = 466
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +3
Query: 6 IQSTDPSLELWGRRLLSSSAPWELPMEL 89
I S D LELWG R LS+SA LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -2
Query: 353 VPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNP 255
+P TP P P P RP PT +P P P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPTPRP 1387
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = -2
Query: 356 AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPCKGGSWLA 231
A P P P P A PA P + P P P GG LA
Sbjct: 176 AAPPAPPPPGAPAAPPAPPFGGPPSAPPPPPAPPVGGGGSLA 217
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -2
Query: 380 PTNNLGC*AVPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNPCKGGSWLAPGGHQQSGQ 204
P G AVP TP P P+A + P+ T +P+P K G PG H
Sbjct: 301 PGQTQGEEAVPGTPLQKPGGPLAPAESPPKTGTEEPSP------KTGEKRPPGLHPTDSP 354
Query: 203 PRPDRR 186
PR R
Sbjct: 355 PRKGSR 360
>SB_14418| Best HMM Match : GRP (HMM E-Value=1.8)
Length = 145
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 522 DSDNDIEARSTGDGSGVCSGRLFCVQVDGDDKS 424
D D D ++ GDG G GR V DGD S
Sbjct: 91 DGDGDSDSDGGGDGDGDGDGRWSMVDGDGDSDS 123
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 154 HSCRHGGYYCHLRSGRGCPDCWCPPG 231
+ CR+ G C + R P C CPPG
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPG 3005
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 344 TPASPTMPMAKPAARPENPTAKPAPKWMNPCKG 246
TPA PT+P A A + P+ PA P G
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPLTG 318
>SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)
Length = 611
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 627 KTSREQMYXQEWKGAPKPYARWTRYRRRPSLCASSDSDNDIEARSTGDGS 478
+TSR+ W+ R R R PS ASS+ D+++ S+ GS
Sbjct: 340 RTSRDMADDFTWRPPRSATTRAHRDRTFPSQTASSNDDDNVSLNSSFSGS 389
>SB_20117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -2
Query: 377 TNNLGC*AVPRTPAS---PTMPMAKPAARPENPTAKPAPK--WMNPCKGGSWLAPGGHQQ 213
+NN P PAS P P + P +P NP++ P P NP P +
Sbjct: 28 SNNPASNPKPNNPASNPKPNNPASNP--KPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNP 85
Query: 212 SGQPRPD 192
S P+P+
Sbjct: 86 SSNPKPN 92
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = -2
Query: 374 NNLGC*AVPRTPAS---PTMPMAKPAARPENPTAKPAPK--WMNPCKGGSWLAPGGHQQS 210
NN P PAS P P + P +P NP++ P P NP P + S
Sbjct: 128 NNPASNPKPNNPASNPKPNNPSSNP--KPNNPSSNPKPNNPSSNPKPNNPASNPKPNNPS 185
Query: 209 GQPRPD 192
P+P+
Sbjct: 186 SNPKPN 191
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 344 TPASPTMPMAKPAARPENPTAKPAPKWMNPCKG 246
TPA PT+P A A + P+ PA P G
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPLTG 322
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 344 TPASPTMPMAKPAARPENPTAKPAPKWMNPCKG 246
TPA PT+P A A + P+ PA P G
Sbjct: 966 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPLTG 998
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 377 TNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNP 255
+NN G A P TPA+ +P+A P+ A P T PAP + P
Sbjct: 220 SNNFGTPATPATPAN-GVPIAGPSGMATPGAFTPPPAPVFTPP 261
>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Frame = -2
Query: 350 PRTPASPTMPMAKPAARPENPTAKPAPKW-MNPCKGGSWLAPGGHQQSGQPRPDRRW 183
P PA+P P P P A P P P GG P G P W
Sbjct: 95 PPPPATPPPPTMPPTPPPPQTPAPPGPDTPAPPAPGGCGAKPHTRIVGGTKAPPGAW 151
>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 507 IEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKN 385
+ +STGD S VC G +F D K + Q E K N
Sbjct: 18 LNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFN 58
>SB_1610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = -1
Query: 612 QMYXQEWKGAPKPYARWTRYRRRPSLCASSDSDNDIEA-RSTGDGSGVCSGR-----LFC 451
Q Y + W G + +Y + + CAS++ D +A + G+ CSG+ ++
Sbjct: 217 QFYGECWSGPTPTGKEYAKYGKSEN-CASTEIDAHKQAIKKCEKGNRFCSGKQWSNYVYH 275
Query: 450 VQVDGDDKSVKTQYFSEN 397
++ D D K K F++N
Sbjct: 276 IEPDCDLKFEKVGCFADN 293
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Frame = -2
Query: 488 ATGVVCVQGVYFVYR*MATISP*RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTM--PMA 315
AT V + Y + SP P S P A P PA+P P
Sbjct: 29 ATTVTTTTANFTYYPHFISSSPPPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPP 88
Query: 314 KPAARPENPTAKPAPK 267
P P P A+PAP+
Sbjct: 89 PPLPAPPPPPAQPAPQ 104
>SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = -2
Query: 374 NNLGC*AVPRTPAS---PTMPMAKPAARPENPTAKPAPK--WMNPCKGGSWLAPGGHQQS 210
NN P PAS P P + P +P NP++ P P NP P + S
Sbjct: 92 NNPASNPKPNNPASNPKPNNPASNP--KPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPS 149
Query: 209 GQPRPD 192
P+P+
Sbjct: 150 SNPKPN 155
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = -2
Query: 374 NNLGC*AVPRTPAS---PTMPMAKPAARPENPTAKPAPK--WMNPCKGGSWLAPGGHQQS 210
NN P PAS P P + P +P NP++ P P NP P + S
Sbjct: 101 NNPASNPKPNNPASNPKPNNPSSNP--KPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPS 158
Query: 209 GQPRPD 192
P+P+
Sbjct: 159 SNPKPN 164
>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1404
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 59 FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 226
+S + A G + G+ ++V+ + + +I V+ IIA+ G++VAV++A A+
Sbjct: 786 YSVIVAVVGVIIAVVGVI-IAVVGVIIAVVGVIIAVVGVIIAVVGVIVAVVVATAV 840
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -2
Query: 419 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNP 255
+P T+ K R PT +L + +PT AKP PT +P K P
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKP 189
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 350 PRTPASPTMPMAKPAARPEN-PTAKPAPKWMNPCKGGSWLAPGGHQQ 213
P+ P+ P P KPA P + P A P M P S PG +QQ
Sbjct: 524 PQPPSPPA-PPPKPAPPPRSPPAAAPCNPAMAPQGCNSMQQPGMYQQ 569
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,972,948
Number of Sequences: 59808
Number of extensions: 557268
Number of successful extensions: 2301
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2253
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -