Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20104
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   156   2e-40
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.0  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  156 bits (379), Expect = 2e-40
 Identities = 77/86 (89%), Positives = 81/86 (94%)
 Frame = +2

Query: 2   NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 181
           ++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5   DHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 182 AIYGLVVAVLIAGALQEPANYPLYKG 259
           AIYGLVVAVLIAG L+EP  Y L+KG
Sbjct: 65  AIYGLVVAVLIAGGLEEPKGYTLFKG 90



 Score =  133 bits (321), Expect = 2e-33
 Identities = 64/66 (96%), Positives = 66/66 (100%)
 Frame = +1

Query: 253 QGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 432
           +GF+HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI
Sbjct: 89  KGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 148

Query: 433 VAIYLY 450
           VAIYLY
Sbjct: 149 VAIYLY 154


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
 Frame = -1

Query: 558 RYRRRPSLCASSDSD----------NDIEARSTGDGSGVCSGRLFCVQVDGDD--KSVKT 415
           RY R PS+  S  SD          ND++       S   S    C  +D D+  +S+ T
Sbjct: 281 RYWRTPSVVVSDYSDYSYLDEKLERNDLDLEKYEGISSTPSQASSCSCLDCDEIRESLDT 340

Query: 414 QYFSENKNKNHSD 376
           Q+    +++ HSD
Sbjct: 341 QFLQVCRSRRHSD 353


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 214 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 116
           NQ  H    D  N  ++  ND+ H   + ++RH
Sbjct: 430 NQARHSSKSDNQN--NNQHNDQAHHSSKSNNRH 460



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -3

Query: 214 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 116
           NQD++    + N  RH  ++D  ++       H
Sbjct: 419 NQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAH 451


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 370 LFVGMI-LILIFAEVLGLYGLIVAIY 444
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 3   IIQSTDPSLELWGRRLLSSS 62
           I + TDP  E W RR L  S
Sbjct: 144 ITELTDPVKEFWERRALQIS 163


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 164 VMAGIIAIYGLVVAVLIAGALQEPANY 244
           +++G+I   GL++ VLI G++ E   +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISEEQKF 437


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 137 LIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPL 250
           L++ SII   + G I +    VAV +   L+ P NY L
Sbjct: 46  LVLGSIIVGTVIGNILV---CVAVFLVRKLRRPCNYLL 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,585
Number of Sequences: 438
Number of extensions: 4299
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)