Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20103
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.57 
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    27   2.3  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   9.3  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.3  

>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 160 AMFIVFFVDGNHHCDRFLQSSPSAIPLAVIIPHGA 56
           ++ IVFFV  N+  D +   +PSA+  A ++ + A
Sbjct: 457 SLLIVFFVSYNYIIDSYQHMAPSALAAATLVRYSA 491


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 511 SEIY*KNAKFISLKPNSQSKSNSLMHKAAENINGIIYFNR 630
           SE+  K   F+S   NS S  N+  HK  + ++ I + NR
Sbjct: 45  SEVQCKLTHFLSSSENSSSVRNTRTHKFKQLLHYIFFSNR 84


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 187 FIHYCFIP*LYHIHNNFVNICTY 255
           F  Y  +  ++H+HN  VNI T+
Sbjct: 73  FSFYLCVKSIFHVHNESVNIWTH 95


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 255 ICANVHKIIMDMIQSWNETIMNKPD 181
           + AN+ KI+ + +Q  NE++  K D
Sbjct: 798 LIANIGKIVSNFLQEQNESLYTKAD 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,915
Number of Sequences: 5004
Number of extensions: 57363
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)