Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20103
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35...    29   2.4  
12_02_0058 + 13015401-13016654                                         27   9.6  

>08_01_0051 -
           355392-355450,355507-355634,356271-356425,356883-357012,
           357600-357739,358384-358552,360286-360557
          Length = 350

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 2   PDRPYSMLQPGLSDAQANGSMGYNDRQRNRRR*TLEKTVTMVIPVDEEDDKHRNTPCTT* 181
           P  P +   P +S  +   + G  +    + R   ++T ++ IPVD +    +NTP T  
Sbjct: 55  PRGPGTTWVPQVSGTKYQAARGVEEATAKQLRPRPDRTPSIAIPVDSDASPRKNTPETVT 114

Query: 182 SGL 190
           S L
Sbjct: 115 SPL 117


>12_02_0058 + 13015401-13016654
          Length = 417

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -1

Query: 152 YXXXXXRESPL*PFSPKFTVGDSSGGHYTPWSHSP 48
           Y       +PL PF P       +GGH+TP    P
Sbjct: 267 YPTDPFESAPLDPFEPPPAAASVTGGHHTPQPSVP 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,574
Number of Sequences: 37544
Number of extensions: 342327
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)