Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20103
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   29   2.4  
SB_42556| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-06)                 27   9.8  
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +1

Query: 76  PPEESPTVNFGENGHNGDSXXXXXXXTSQHALHDLIWFIHYCFIP*LYHIHNNFVNICTY 255
           PPE     N G                 +H  +  + FI YCF+   +HI +N++ I   
Sbjct: 525 PPEYVILSNPGNQSQRSLGYSHGGNVGEKHQSYKQVLFIIYCFLQLYFHITSNYILIVNQ 584

Query: 256 DLKKD 270
             +K+
Sbjct: 585 LARKN 589


>SB_42556| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-06)
          Length = 294

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 403 TWNRFTYFCGSRTLYTMILV 462
           T +R  YFCG+ +LY M L+
Sbjct: 94  TLHRLAYFCGAMSLYVMALM 113


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/37 (48%), Positives = 19/37 (51%)
 Frame = +2

Query: 503 LGNPKFIRKMQNLLA*SPTASLNQIVLCIRLRKTSME 613
           L NPK IRK QN  A S T S  Q  +  RL   S E
Sbjct: 57  LANPKHIRKFQNTFANSKTHSQIQKHIRPRLPPISKE 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,022,271
Number of Sequences: 59808
Number of extensions: 398399
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)