Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20103
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13560.1 68418.m01566 expressed protein weak similarity to SP...    30   1.1  
At4g12690.1 68417.m01993 expressed protein                             29   2.6  
At5g55340.1 68418.m06896 long-chain-alcohol O-fatty-acyltransfer...    29   3.5  
At2g04220.1 68415.m00407 hypothetical protein                          28   6.1  

>At5g13560.1 68418.m01566 expressed protein weak similarity to
           SP|O42184 Restin (Cytoplasmic linker protein-170)
           (CLIP-170) {Gallus gallus}
          Length = 679

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 5   DRPYSMLQPGLSDAQANGSMGYNDRQRNRRR*TLEKTVTMVIPVDEEDDKHRNTPCT 175
           D      Q  ++  + N  M   D + +  R  LEK     IP + ED +H+ TP T
Sbjct: 206 DELLQFAQNAITGLKINAEMLRIDAEASDLRKKLEKMNASQIPQESEDKEHKETPLT 262


>At4g12690.1 68417.m01993 expressed protein
          Length = 285

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 342 LIVRAVALSWEIRENNTLIMNVEPIHIFLWI*DTIY 449
           ++V+   L W+ R N T++++ EP+ +F  + D ++
Sbjct: 201 VLVQVRNLQWKFRGNQTVLVDKEPVQVFWDVYDWLF 236


>At5g55340.1 68418.m06896 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase similarity to wax synthase
           wax synthase - Simmondsia chinensis, PID:g5020219
           similar to wax synthase [gi:5020219] from Simmondsia
           chinensis
          Length = 333

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 617 IIPLMFSAA--LCIRLFDLDWLLGFKLINFAF 528
           ++PL FS+     I  F L WL  FKLI F+F
Sbjct: 48  VLPLFFSSLHLSLITAFFLTWLANFKLILFSF 79


>At2g04220.1 68415.m00407 hypothetical protein
          Length = 307

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 8/36 (22%), Positives = 23/36 (63%)
 Frame = +3

Query: 342 LIVRAVALSWEIRENNTLIMNVEPIHIFLWI*DTIY 449
           ++++   L W+ R N T++++ +P+ +F  + D ++
Sbjct: 206 VLIQVKNLQWKFRGNQTVLVDKQPVQVFWDVYDWLF 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,175,230
Number of Sequences: 28952
Number of extensions: 288653
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)