Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20102
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   0.73 
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.73 
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    27   6.8  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    27   6.8  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    27   6.8  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    27   6.8  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    27   6.8  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr...    27   9.0  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    27   9.0  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 135 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 245
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 135 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 245
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 261 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 368
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 273 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 368
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/84 (22%), Positives = 41/84 (48%)
 Frame = +3

Query: 93  DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSR 272
           D+L+ ++     + +  SA++KS+  YE K  EV+T  +N  +    M+ +E+ +     
Sbjct: 152 DLLQLEMALRKCLEENGSAIKKSRPYYERK--EVLTRTMNSQL--ELMSILEHEVQERKD 207

Query: 273 APRTSSGIVSQLSSDLSSPKTRLS 344
           +   S   + Q+S  +   ++  S
Sbjct: 208 SYSDSMRALEQISDQIHQERSSQS 231


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 109 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 207
           SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 109  SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 207
            SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
            roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 147  AVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSS 290
            A++  + L   +  + +   V KLIRN+K++  EY + + +   R +S
Sbjct: 1412 AIDLRQPLSPLRLHDYVKKYVEKLIRNSKISVGEYMVRYATLLIRKAS 1459


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 235 ILLFRISLFTTFVMTSLFFSSYK 167
           I LF +S FTT  +  L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 ALVHKLNRVFGEDKSELNWETIPD 287
           AL+H+    + E K + NWE  PD
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 ALVHKLNRVFGEDKSELNWETIPD 287
           AL+H+    + E K + NWE  PD
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 ALVHKLNRVFGEDKSELNWETIPD 287
           AL+H+    + E K + NWE  PD
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 ALVHKLNRVFGEDKSELNWETIPD 287
           AL+H+    + E K + NWE  PD
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 42  LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 191
           LC F +       DV     EE+L +   VAD+   V++ K   +E+  E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431


>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = +3

Query: 210 NKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMM 389
           ++LI+N      E    F    P  SS    Q  +  S P T  S+ ++ T S      +
Sbjct: 535 SRLIKNRGNEPSEKFAAFTGFTPMPSSSSQHQPGTSSSGPSTSSSIASTPTPSTSN--SL 592

Query: 390 FKATMADLPTATARTRQARESA 455
           F  +    P  +A+ R+ARE+A
Sbjct: 593 FDKSFN--PRKSAKKREAREAA 612


>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = +3

Query: 210 NKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMM 389
           ++LI+N      E    F    P  SS    Q  +  S P T  S+ ++ T S      +
Sbjct: 535 SRLIKNRGNEPSEKFAAFTGFTPMPSSSSQHQPGTSSSGPSTSSSIASTPTPSTSN--SL 592

Query: 390 FKATMADLPTATARTRQARESA 455
           F  +    P  +A+ R+ARE+A
Sbjct: 593 FDKSFN--PRKSAKKREAREAA 612


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 173 RGEEERSHHKCREQTDTK---QQDELHGVRHQLWLQGSKDIVRDCFPVEFRLIFA 328
           R EE+    K R QT T+   Q+ E+     ++ L+ S+D+ RDC  ++    FA
Sbjct: 41  RIEEKVLEIKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCIDMDAYFA 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,329,048
Number of Sequences: 27780
Number of extensions: 171821
Number of successful extensions: 678
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)