Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20102
(471 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 33 0.074
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 31 0.52
At1g80840.1 68414.m09484 WRKY family transcription factor simila... 27 4.8
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 4.8
At1g59077.1 68414.m06670 hypothetical protein 27 4.8
At1g58766.1 68414.m06659 hypothetical protein 27 4.8
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 4.8
At5g64820.1 68418.m08155 hypothetical protein 27 6.4
At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) / ... 27 6.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 6.4
At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP86A1) ... 27 8.5
At5g47690.1 68418.m05887 expressed protein 27 8.5
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 27 8.5
At4g28590.1 68417.m04089 expressed protein 27 8.5
At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recogniti... 27 8.5
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 27 8.5
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 33.5 bits (73), Expect = 0.074
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 6 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 185
+D + P+ +I+ + V +L S +P D+L++ L D DSA +K E K
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213
Query: 186 SEVITNV 206
+ N+
Sbjct: 214 GSIAPNL 220
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 30.7 bits (66), Expect = 0.52
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 276 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 368
PR +G S L SDL P+T + CTS V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201
>At1g80840.1 68414.m09484 WRKY family transcription factor similar
to WRKY transcription factor GB:BAA87058 GI:6472585 from
[Nicotiana tabacum]
Length = 302
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 364 TVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLMAY 248
T ALV +LNRV E+K T+ D L +LM Y
Sbjct: 30 TSALVEELNRVSAENKKLSEMLTLMCDNYNVLRKQLMEY 68
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 99 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 206
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 99 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 206
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 99 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 206
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.5 bits (58), Expect = 4.8
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 52 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 147
+W + +L +P ++ FW + +ASS + +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
>At5g64820.1 68418.m08155 hypothetical protein
Length = 145
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = -3
Query: 439 CLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPK 260
C+++ + G SA A + A ++ E ++V ++ +FG +WE I + ++ K
Sbjct: 15 CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI-QGAMQKIQMK 73
Query: 259 LMAYSMQF 236
L ++ F
Sbjct: 74 LYPPNLDF 81
>At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) /
vesicle soluble NSF attachment protein receptor VTI1a
(VTI1A) identical to SP|Q9SEL6 Vesicle transport v-SNARE
11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a)
(Vesicle soluble NSF attachment protein receptor VTI1a)
(AtVTI1a) {Arabidopsis thaliana}
Length = 221
Score = 27.1 bits (57), Expect = 6.4
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +3
Query: 144 SAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQL---SS 314
SA+ ++K SE+ + + N + KM+ + + P S ++ +L S
Sbjct: 25 SAISLDGEQKKQKLSEIKSGLENAEVLIRKMD-----LEARTLPPNLKSSLLVKLREFKS 79
Query: 315 DLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTR 437
DL++ KT + TS ++ + +A MAD TA+A R
Sbjct: 80 DLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 6.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 116 VKLLLQNVVRDVGICSIQRCH 54
+K ++N+++ G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747
>At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP86A1) /
CYPLXXXVI / P450-dependent fatty acid omega-hydroxylase
identical to Cytochrome P450 86A1 (CYPLXXXVI)
(P450-dependent fatty acid omega-hydroxylase)
(SP:P48422) [Arabidopsis thaliana]
Length = 513
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 6 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLY-EEK 182
+DA K P+ +L F+ + +P D+L+ N V+ S+V S +
Sbjct: 262 IDARKNSPSDDLLSRFLKKRDVNGNVLPTDVLQRIALNFVLAGRDTSSVALSWFFWLVMN 321
Query: 183 KSEVITNVVNKL 218
EV T +VN+L
Sbjct: 322 NREVETKIVNEL 333
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +3
Query: 93 DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIR 224
D+LE++ Y V+ + + +YE ++SEV+ + +K+++
Sbjct: 734 DMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILK 777
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 26.6 bits (56), Expect = 8.5
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = -3
Query: 409 SAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLMAYSMQFIL 230
S +++L I A R S+ L + R FG+D ++W++I D L +L L + +L
Sbjct: 1269 STLLSLCIQAPRSSKGGML--RSGRSFGKDSPAVHWQSIIDG-LNSLLVTLKENHVPLVL 1325
Query: 229 LFRI-SLFTTFVMTSLFFS 176
+ +I S +++ LF S
Sbjct: 1326 IQKIYSQTFSYINVQLFNS 1344
>At4g28590.1 68417.m04089 expressed protein
Length = 331
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 349 HKLNRVFGEDKSELNWETIPDD 284
H + V G+D SE++WE DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201
>At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 471
Score = 26.6 bits (56), Expect = 8.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 55 WHLCMLQIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAK 192
W +L PT TT SSF+I+ S + TV+ R + R K
Sbjct: 385 WEDGVLNCPTEQTTRPDSSFSISHSKVVDTVQQARKAAKKAREVVK 430
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 39 ILCLFVASLYAA-DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 212
+LC+ +++ DS + + + + +V DYD+ V+ S + E+ S ++TN V+
Sbjct: 405 LLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLMLTNGVD 463
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,899,998
Number of Sequences: 28952
Number of extensions: 161567
Number of successful extensions: 724
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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