Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20101
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   2.7  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   4.7  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   6.2  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   8.3  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   8.3  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -2

Query: 226 QNSLLHNYFIYIYIKVKLYTKRYGRKLNIFKMAFDQFIS 110
           +N+   NY+ ++ +  K ++K Y  +  I + +F + IS
Sbjct: 365 ENAFSQNYYSHLQMVAKHFSKNYANQSGIVQRSFAECIS 403


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 314 ITLIFGLIIRACFYNITYLYY 252
           ITL   L++  CFY++ Y  Y
Sbjct: 319 ITLSIALLVTLCFYDVKYARY 339


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 20  RVFDNRVYARSWNHVPNKILKSTSFYT 100
           R FD + +  +W  +P  I +STSF T
Sbjct: 244 RAFDYK-WTVNWRFIPRSIFESTSFST 269


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 53  WNHVPNKILKSTSFYTRWI 109
           W  + NK+L   + YT WI
Sbjct: 352 WLFITNKLLNKDNMYTAWI 370


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 448 CIDLANVIFTKSTQINLNIDIH 383
           C+D  NVI T   Q  LN+ +H
Sbjct: 390 CLDRTNVIQTSIAQFILNMQLH 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,954
Number of Sequences: 5004
Number of extensions: 36369
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)