Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20100
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...   118   5e-28
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    95   5e-21
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    80   2e-16
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    27   2.8  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    26   4.9  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   6.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   8.6  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   8.6  

>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score =  118 bits (285), Expect = 5e-28
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = +2

Query: 260 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQVLD 439
           ++IYR YATLYFVF VD  ESELGILDLIQVFVE LD+CF NVCELDL+F     H +L 
Sbjct: 60  RIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILA 119

Query: 440 ELVMGGMVLQTNMAEILCRLQEQI 511
           E+V GG+VL+TN+ EI+   Q Q+
Sbjct: 120 EVVSGGLVLETNLNEIVLAAQNQM 143



 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 27/57 (47%), Positives = 37/57 (64%)
 Frame = +3

Query: 78  MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLEGGSLIG 248
           MI A+ +FNN GKPRL+KFY   +E +QQ++I + +  VS R    CNFLE   + G
Sbjct: 1   MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAG 57


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 95.5 bits (227), Expect = 5e-21
 Identities = 42/83 (50%), Positives = 60/83 (72%)
 Frame = +2

Query: 254 NYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQV 433
           N KL+YR YA LYF FCVDS++++L IL++I  FVE LD  F NVCELDLIF+      +
Sbjct: 55  NSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAI 114

Query: 434 LDELVMGGMVLQTNMAEILCRLQ 502
           LDE+++GG + ++N   +L R++
Sbjct: 115 LDEIILGGEIGESNKKSVLERIE 137



 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +3

Query: 78  MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNV-CNFLE 230
           MI+ IL+ N HGK RLSK+Y  F++D + ++     QL+S+R+     NFLE
Sbjct: 1   MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLE 52


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 35/77 (45%), Positives = 57/77 (74%)
 Frame = +2

Query: 260 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQVLD 439
           K++YR YA+L+FV  ++  ++EL IL++I  FVE LDK F NVCELDLIF+ + A+ V++
Sbjct: 57  KIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVME 116

Query: 440 ELVMGGMVLQTNMAEIL 490
           EL++ G + +++   +L
Sbjct: 117 ELLLAGELQESSKTNVL 133



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 81  IKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLE 230
           IK  L+ +  GK RL+K++   +   + +II++   LV  R   +CNF+E
Sbjct: 3   IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVE 52


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 375 HLSKVSTNTCIRSSIPSSLSDESTQNTKYK 286
           HL+++  +   + S+P++  DE  QNT YK
Sbjct: 245 HLNRIDPSLYSKWSLPTNDVDEFLQNTAYK 274


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 193 TNWNVSFIICCCISSL 146
           TNW   F +CC +S L
Sbjct: 238 TNWRTFFFLCCLLSPL 253


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +3

Query: 48  LGNNTEF*SEMIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFL 227
           L    E  S M   +   N   K ++  +    N ++  + +KE   L ++ + N+CN  
Sbjct: 511 LSKQVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLR 570

Query: 228 E 230
           E
Sbjct: 571 E 571


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 509 SAPEACRVSQPCLSAAPCLPSRAHPAP 429
           SAP    +  P  ++AP +PS+A P P
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPIP 168


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 220 LHTLSSRFETNWNVSFIICCCISSLKYW*NLE 125
           L ++++ F   W +    CCC+    YW  LE
Sbjct: 359 LWSMTTSFINIWRIHPGTCCCVVLSIYWPYLE 390


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +2

Query: 257 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVC 391
           ++  +RH         +  +E ++ I D     VE  D C EN C
Sbjct: 120 HRFRFRHRDLKLENILIKVNEQQIKIADFGMATVEPNDSCLENYC 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,351
Number of Sequences: 5004
Number of extensions: 47977
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)