Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20100
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   2e-40
SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)              85   3e-17
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_34104| Best HMM Match : SH2 (HMM E-Value=1.6e-24)                   29   3.9  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.9  
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.9  

>SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score =  162 bits (394), Expect = 2e-40
 Identities = 75/98 (76%), Positives = 84/98 (85%)
 Frame = +2

Query: 254 NYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQV 433
           ++KL+YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH D  H +
Sbjct: 34  DFKLVYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHHI 93

Query: 434 LDELVMGGMVLQTNMAEILCRLQEQIKCRKLRPGISAA 547
           L E+VMGGMVL+TNM+EIL  ++ Q K  K   GISAA
Sbjct: 94  LAEIVMGGMVLETNMSEILTHIEAQNKLEKSEAGISAA 131



 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +3

Query: 156 MQQQIIKETFQLVSKRDDNVCNFLEGGSLIGGS 254
           MQQQIIKETF LVS+RDDNVCNFLEGGSLIGG+
Sbjct: 1   MQQQIIKETFHLVSRRDDNVCNFLEGGSLIGGA 33


>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
          Length = 141

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 37/82 (45%), Positives = 58/82 (70%)
 Frame = +2

Query: 254 NYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQV 433
           N+K++YR YA LYF FCVD S++ L  L+ I  FVE L++ F NVCELDL+F+    + V
Sbjct: 53  NFKIVYRRYAGLYFCFCVDVSDNNLYYLEAIHNFVEVLNEFFHNVCELDLVFNFYKVYSV 112

Query: 434 LDELVMGGMVLQTNMAEILCRL 499
           +DE+ + G + +T+ +++L +L
Sbjct: 113 VDEMFLAGELRETSQSKVLKQL 134



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +3

Query: 81  IKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLE 230
           I+ IL+ N  GK RL+K+Y  F++D +Q++I+E   LV+ RD    NF+E
Sbjct: 1   IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHALVTVRDAKHTNFVE 50


>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -3

Query: 602  PGVAAARFMLLTAETALAGQLICRASAFCILSAPEACRVSQPCLSAAPCLPSRAHPAPDG 423
            PG A  +F  L    + +G L C  +A   ++      ++QPCL+A+P +P       + 
Sbjct: 1315 PG-AIVQFCRLLKSRSHSGNLYCSFAACSSINVEHFAPITQPCLTASPKMPIEHALTANI 1373

Query: 422  PHQ 414
            PH+
Sbjct: 1374 PHR 1376


>SB_34104| Best HMM Match : SH2 (HMM E-Value=1.6e-24)
          Length = 421

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 487 YLSHVCLQHHASHHELIQHLMGRISVED 404
           Y   +C  H   H+++++H  G++ +ED
Sbjct: 46  YALSMCNNHKVIHYQILRHADGKVGIED 73


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -3

Query: 503 PEACRVSQPCLSAAPCLPSRAHPAPDGPHQRGRSSPAHRHSQ 378
           P+  R S P  S     P R HP P  P  R      HR +Q
Sbjct: 417 PQQQRQSPPQPSPTGAPPQRPHPPPQQPSPRPPMGVPHRGAQ 458


>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 885

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 470 TNMAEILCRLQEQIKCRKLRP 532
           T+ AE+LCR + + +CR L+P
Sbjct: 353 TSRAEVLCRRRPRCRCRCLKP 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,023,340
Number of Sequences: 59808
Number of extensions: 363114
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)