Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20100
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, smal... 172 1e-43
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 82 3e-16
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 76 2e-14
AF003134-4|AAB54145.2| 395|Caenorhabditis elegans Hypothetical ... 30 1.1
Z93385-8|CAN86626.1| 560|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z93385-7|CAN86625.1| 556|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z93385-6|CAB07641.1| 558|Caenorhabditis elegans Hypothetical pr... 28 4.6
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 28 6.0
X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein. 27 8.0
AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical ... 27 8.0
AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and gl... 27 8.0
>AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 3 protein.
Length = 192
Score = 172 bits (419), Expect = 1e-43
Identities = 83/120 (69%), Positives = 96/120 (80%)
Frame = +2
Query: 254 NYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQV 433
+Y+LIYRHYATLYF+FCVDSSESELGILDLIQVFVETLD+CFENVCELDLIFH D H +
Sbjct: 60 DYRLIYRHYATLYFIFCVDSSESELGILDLIQVFVETLDRCFENVCELDLIFHVDRVHHI 119
Query: 434 LDELVMGGMVLQTNMAEILCRLQEQIKCRKLRPGISAARPELSLQSKA*ILPQQLRDMKL 613
L E+VMGGMVL+TNM EIL R+QEQ K +K GI+AA K + QQL+D+KL
Sbjct: 120 LGEIVMGGMVLETNMNEILQRIQEQDKIQKQEAGITAAPARAVSAVKNMNISQQLKDIKL 179
Score = 105 bits (253), Expect = 2e-23
Identities = 47/59 (79%), Positives = 54/59 (91%)
Frame = +3
Query: 78 MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLEGGSLIGGS 254
MIKAILV NNHGKPRL KFYQ++ E+ QQQI++ETFQLVSKRDDNVCNFLEGG+LI G+
Sbjct: 1 MIKAILVINNHGKPRLLKFYQHYPEEKQQQIVRETFQLVSKRDDNVCNFLEGGTLIDGN 59
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/98 (39%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Frame = +2
Query: 212 CVQLS*RRQSNW-RF-NYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFEN 385
CV + + +N+ F N+K++YR YA LYF CVD +++ L L+ I FVE L++ F N
Sbjct: 38 CVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHN 97
Query: 386 VCELDLIFHADAAHQVLDELVMGGMVLQTNMAEILCRL 499
VCELDL+F+ + V+DE+ + G + +T+ ++L +L
Sbjct: 98 VCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQL 135
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +3
Query: 78 MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLE 230
MI+ IL+ N GK RL+K+Y +F++D +Q++I+E V+ RD NF+E
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMHFDDDEKQKLIEEVHACVTVRDAKHTNFVE 51
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 76.2 bits (179), Expect = 2e-14
Identities = 32/83 (38%), Positives = 58/83 (69%)
Frame = +2
Query: 260 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQVLD 439
K++Y+ YA+LYF ++ +++EL L++I +VE LDK F +VCELD+IF+ + A+ +LD
Sbjct: 56 KVVYKRYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILD 115
Query: 440 ELVMGGMVLQTNMAEILCRLQEQ 508
E ++ G + +T+ ++L + Q
Sbjct: 116 EFLLAGEIQETSKKQVLKAIAAQ 138
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 78 MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLE 230
M++ +L+F+ GK RL K+Y + + +++I +E + R +C FLE
Sbjct: 1 MMQYMLLFSRQGKLRLQKWYTAYPDKQKKKICRELITQILARKPKMCAFLE 51
>AF003134-4|AAB54145.2| 395|Caenorhabditis elegans Hypothetical
protein ZC581.7 protein.
Length = 395
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 51 GNNTEF*SEMIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKE 179
GN+ E +EM+K V + P + KFY Y +D+ ++ E
Sbjct: 155 GNDEESLAEMMKEARVMQLYDHPNIVKFYGYIVDDIPYLLVLE 197
>Z93385-8|CAN86626.1| 560|Caenorhabditis elegans Hypothetical
protein M01E5.3c protein.
Length = 560
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 506 APEACRVSQPCLSAAPCLPSRAHPAPD 426
AP A +QP L AAP P+ AP+
Sbjct: 184 APGAAAAAQPALEAAPAAPAAGAAAPE 210
>Z93385-7|CAN86625.1| 556|Caenorhabditis elegans Hypothetical
protein M01E5.3b protein.
Length = 556
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 506 APEACRVSQPCLSAAPCLPSRAHPAPD 426
AP A +QP L AAP P+ AP+
Sbjct: 184 APGAAAAAQPALEAAPAAPAAGAAAPE 210
>Z93385-6|CAB07641.1| 558|Caenorhabditis elegans Hypothetical
protein M01E5.3a protein.
Length = 558
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 506 APEACRVSQPCLSAAPCLPSRAHPAPD 426
AP A +QP L AAP P+ AP+
Sbjct: 184 APGAAAAAQPALEAAPAAPAAGAAAPE 210
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 482 QPCLSAAPCLPSRAHPAPDGPHQRGRSSPAHRHSQSIY 369
+PC S++ PAP GP Q G +S +H + S Y
Sbjct: 35 RPCSSSSSLSNDSFVPAPQGP-QNGHTSSSHDNDYSEY 71
>X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein.
Length = 402
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 503 PEACRVSQPCLSAAPCLPS 447
P+AC V CL+ A C P+
Sbjct: 230 PDACSVKDACLNGAKCFPN 248
>AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical
protein T24E12.3 protein.
Length = 288
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 114 KPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCN 221
K L+KF+Q+F + ++I F +V N+C+
Sbjct: 13 KETLAKFHQWFKNHKKLELISTMFPMVCGLPVNICS 48
>AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein2 protein.
Length = 402
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 503 PEACRVSQPCLSAAPCLPS 447
P+AC V CL+ A C P+
Sbjct: 230 PDACSVKDACLNGAKCFPN 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,331
Number of Sequences: 27780
Number of extensions: 274301
Number of successful extensions: 829
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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