Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20100
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50860.1 68416.m05569 clathrin adaptor complex small chain fa...   116   9e-27
At2g19790.1 68415.m02312 clathrin adaptor complex small chain fa...   100   7e-22
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica...    85   3e-17
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa...    85   5e-17
At1g47830.1 68414.m05324 clathrin coat assembly protein, putativ...    83   1e-16
At4g35410.1 68417.m05029 clathrin adaptor complex small chain fa...    71   5e-13
At4g08520.1 68417.m01403 clathrin adaptor complex small chain fa...    34   0.065
At2g40620.1 68415.m05010 bZIP transcription factor family protei...    29   1.8  
At1g60970.1 68414.m06863 clathrin adaptor complex small chain fa...    29   1.8  
At1g01730.1 68414.m00092 expressed protein                             29   3.2  
At3g60810.2 68416.m06803 expressed protein                             28   4.2  
At3g60810.1 68416.m06802 expressed protein                             28   4.2  
At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family pr...    28   5.6  

>At3g50860.1 68416.m05569 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 166

 Score =  116 bits (280), Expect = 9e-27
 Identities = 54/101 (53%), Positives = 70/101 (69%)
 Frame = +2

Query: 260 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQVLD 439
           +L+Y+HYATLYFV   D SE+EL +LDLIQV VETLDKCF NVCELD++F+    H VLD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 440 ELVMGGMVLQTNMAEILCRLQEQIKCRKLRPGISAARPELS 562
           E+V GG VL+T+ AE++  ++E  K       IS     +S
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVS 161



 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 28/57 (49%), Positives = 39/57 (68%)
 Frame = +3

Query: 78  MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLEGGSLIG 248
           MIKA+++ N  GKPRL+KFY Y   + QQ++I+  F ++  R +NV NFLE  SL G
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFG 57


>At2g19790.1 68415.m02312 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 143

 Score =  100 bits (240), Expect = 7e-22
 Identities = 43/83 (51%), Positives = 63/83 (75%)
 Frame = +2

Query: 254 NYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQV 433
           NYK++YR YA+L+F+  VD  E+EL IL+ I + VET+DK F NVCELD++FH + AH +
Sbjct: 55  NYKIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFM 114

Query: 434 LDELVMGGMVLQTNMAEILCRLQ 502
           L+E+VM G +++T+ A IL  +Q
Sbjct: 115 LEEMVMNGCIVETSKANILSPIQ 137



 Score = 33.9 bits (74), Expect = 0.085
 Identities = 14/50 (28%), Positives = 30/50 (60%)
 Frame = +3

Query: 81  IKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLE 230
           I+ IL+ N  G+ RL+++Y++   + ++ +  E  +    R+D  C+F+E
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVE 52


>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
           to clathrin assembly protein AP19 GI:2231698 from
           [Arabidopsis thaliana]
          Length = 161

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 38/85 (44%), Positives = 61/85 (71%)
 Frame = +2

Query: 245 WRFNYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAA 424
           WR  YK++Y+ YA+LYF  C+D +++EL +L++I  +VE LD+ F +VCELDLIF+   A
Sbjct: 52  WR-GYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKA 110

Query: 425 HQVLDELVMGGMVLQTNMAEILCRL 499
           + +LDEL++ G  LQ +  + + R+
Sbjct: 111 YYILDELLIAG-ELQESSKKTVARI 134



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 78  MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLE 230
           MI  +L+ +  GK RL+K+Y  + +  + ++I+E   ++  R   +CNF+E
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIE 51


>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 162

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 38/85 (44%), Positives = 60/85 (70%)
 Frame = +2

Query: 245 WRFNYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAA 424
           WR  YK++Y+ YA+LYF  C+D  ++EL +L++I  +VE LD+ F +VCELDLIF+   A
Sbjct: 52  WR-GYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKA 110

Query: 425 HQVLDELVMGGMVLQTNMAEILCRL 499
           + +LDEL++ G  LQ +  + + R+
Sbjct: 111 YYILDELLIAG-ELQESSKKTVARI 134



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 78  MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLE 230
           MI  +L+ +  GK RL+K+Y  + +  + ++I+E   ++  R   +CNF+E
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVE 51


>At1g47830.1 68414.m05324 clathrin coat assembly protein, putative
           similar to clathrin coat assembly protein AP17
           GB:CAA65533 GI:2959358 from [Zea mays]; contains Pfam
           profile: PF01217 clathrin adaptor complex small chain
          Length = 142

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 37/83 (44%), Positives = 56/83 (67%)
 Frame = +2

Query: 257 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQVL 436
           +K+IYR YA L+F  CVD +++EL  L+ I +FVE LD  F NVCELDL+F+    + +L
Sbjct: 55  HKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114

Query: 437 DELVMGGMVLQTNMAEILCRLQE 505
           DE ++ G + +T+   I+ R+ E
Sbjct: 115 DEFILAGELQETSKRAIIERMSE 137



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +3

Query: 78  MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLE 230
           MI+ IL+ N  GK RL+K+Y    E  + ++  E  +LV  RD    NF+E
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVE 51


>At4g35410.1 68417.m05029 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 124

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 29/56 (51%), Positives = 43/56 (76%)
 Frame = +2

Query: 245 WRFNYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH 412
           WR  YK++Y+ YA+LYF  C+D  ++EL +L++I  +VE LD+ F +VCELDLIF+
Sbjct: 52  WR-GYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFN 106



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 78  MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLE 230
           MI  +L+ +  GK RL+K+Y  + +  + ++I+E   ++  R   +CNF+E
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVE 51


>At4g08520.1 68417.m01403 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 181

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +2

Query: 263 LIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCE-LDLIFHADAAHQVLD 439
           ++Y+    L+F      +E+EL +  ++Q F + +     N  E ++ + + D     LD
Sbjct: 69  VVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFLCLD 128

Query: 440 ELVMGGMVLQTN 475
           E+V  GMVL+T+
Sbjct: 129 EMVDQGMVLETD 140


>At2g40620.1 68415.m05010 bZIP transcription factor family protein
           identical to b-Zip DNA binding protein GI:2246376 from
           [Arabidopsis thaliana]; contains a bZIP transcription
           factor basic domain signature (PDOC00036)
          Length = 367

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 470 SAAPCLPSRAHP--APDGPHQRGRSSPAHRHSQSI 372
           SA P  P   +P  A +G  + G S P HRHS S+
Sbjct: 87  SAGPSAPRSDNPFSAENGGAEAGNSRPRHRHSLSV 121


>At1g60970.1 68414.m06863 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 177

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 254 NYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFE-NVCELDLIFHADAAHQ 430
           N  ++Y+    L+F       E+EL +  +++   + +      NV + + + + D    
Sbjct: 62  NNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIFL 121

Query: 431 VLDELVMGGMVLQTN 475
             DE++ GG+VL+T+
Sbjct: 122 SFDEIIDGGIVLETD 136


>At1g01730.1 68414.m00092 expressed protein
          Length = 224

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 509 SAPEACRVSQPCLSAAPCLPSRAHPAPDGPHQRGRSSPA 393
           S   A RV++P  +A   LP++A P P    QR    P+
Sbjct: 4   STSPATRVTEPPPAATSSLPAQAPPLPTSADQRSAELPS 42


>At3g60810.2 68416.m06803 expressed protein 
          Length = 209

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 494 CRVSQPCLSAAPCLPSRAHPAPDGPHQRGRSSPAHR 387
           C  +  C+S +  +  R H AP   +  GR +P +R
Sbjct: 78  CPATNNCISTSENISDRVHYAPPWNYNGGRKTPVNR 113


>At3g60810.1 68416.m06802 expressed protein 
          Length = 214

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 494 CRVSQPCLSAAPCLPSRAHPAPDGPHQRGRSSPAHR 387
           C  +  C+S +  +  R H AP   +  GR +P +R
Sbjct: 83  CPATNNCISTSENISDRVHYAPPWNYNGGRKTPVNR 118


>At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 782

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 302 CVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHA 415
           C+D ++S +G    +   V+ L K  E  C+LD + HA
Sbjct: 539 CLDEAKSVIGSSQAVPFLVQLLQKEIETQCKLDAL-HA 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,147
Number of Sequences: 28952
Number of extensions: 248438
Number of successful extensions: 679
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)