Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20099
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    28   1.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   4.8  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   6.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.3  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   6.3  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.4  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    25   8.4  

>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 255 DGSRNTMEYCYKLWVGNGQHIVRKYFPY 338
           +G+ + +EYC +L V  G H++ + + Y
Sbjct: 134 NGNTSGLEYCLRLLVNYGDHVLTEKYTY 161


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 265 GTPWSTATSCGSATDSTLSESTSP 336
           GT    A S GSAT  T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 121 NKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 228
           N+++  K+    L G Y +A      ++ QGKGS+I
Sbjct: 109 NEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 121 NKELEEKLYNSILTGDYDSAVRQSLE 198
           + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 357 AGNFVKLIYRNYNLALKLGPTLDPANERLAYGDGKEKNSDLISWKFITLWETTRVYFKIH 536
           AG +   I+  Y+ +++  P + P NE   YG    +  +L  W  +  +  T  +F++ 
Sbjct: 125 AGLYTMGIFDKYDDSVQANPNVPPLNEPFPYGRLPIRGVNLGGWLSMEPF-ITPSFFQVK 183

Query: 537 N 539
           N
Sbjct: 184 N 184


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 232 NVVNNLIMTEVGTPWSTATSCGSATDSTLSESTSPITLDSSWP 360
           N   ++    V TP +   S  ++T     ++TSPI   SS P
Sbjct: 198 NPAEHMTGAYVNTPLNQPPSYAASTQPEFQQTTSPIFSSSSTP 240


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 205 NQGKGSIIQNVVNNLIMTEVGTPWSTATSCGSATDSTLSESTSPITLDS 351
           N+ KG   +    NL++ E G P   ATS G+     +++    +  D+
Sbjct: 5   NERKGFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADT 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,367
Number of Sequences: 5004
Number of extensions: 45361
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)