Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20099
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 29 2.1
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 4.9
03_04_0206 - 18493178-18495310 28 4.9
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 28 6.5
02_05_1313 - 35658599-35658683,35659231-35659313,35659394-356594... 28 6.5
02_05_1127 + 34292894-34293284,34293948-34295443 28 6.5
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 28 6.5
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 28 6.5
07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938... 27 8.6
>07_03_0203 + 15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 29.5 bits (63), Expect = 2.1
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Frame = -2
Query: 336 RGSTF*QCAVRCRPTACSSTPWCSDF---RHDQVVNYILDDGALALVLVFQALTDSAVVV 166
R +TF + R + C+ CS F RH ++YI L L++ + + +
Sbjct: 880 RQTTFKEQLESLRSSLCTILGTCSTFQGIRHTLNLSYINLPNYLKTCLLYLGIYPTGYTI 939
Query: 165 TGEDAVVQFLLEFFVRTAHAYRGHFSDAGADGEHARREHHEKFHYDSCLFPI 10
+D V Q++ E F + H G D EH + + + S + P+
Sbjct: 940 RKDDLVKQWVAEGFASSMH---------GQDAEHVAKGYFNELVNRSVVQPV 982
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 353 DESKVIGEVLSDNVLSVADPQLVAVLHGVPTSVMIRLLTTFWMMEPLPWFS 201
D + +I + + +N+ S+ D + + + + S +IRLL T + P W +
Sbjct: 1137 DPAAMINQNIEENLFSMLDEETDSEIAALVRSTIIRLLYTSCPLRPSRWLA 1187
>03_04_0206 - 18493178-18495310
Length = 710
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 156 DAVVQFLLEFFVRTAHAYRGHFSDAGADGEHARREHHEKF 37
+ V ++ + H YRG+F D + E R+E + KF
Sbjct: 364 NTVCNEIIHLHDKNLHVYRGNFDDFESGYEQKRKEMNRKF 403
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 575 VELSFKYWLYFSVVDLEVHSCCFPQGNELPTDEVAVLFLTIAVCKSL 435
+ L F + +F VVD+E SC + E VLFL +C+ L
Sbjct: 805 INLQFPAYTFFDVVDMEDFSCMGKKSME----AAVVLFLLQKLCEGL 847
>02_05_1313 -
35658599-35658683,35659231-35659313,35659394-35659489,
35659615-35659693,35659775-35659852,35659989-35660030,
35660435-35660532,35660628-35660747,35660840-35660926
Length = 255
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +1
Query: 178 AVRQSLEYENQGKGSIIQNVVNNLIMT--EVGTPWSTATSCGSATDSTLSESTSPITLDS 351
A+R +Y N+ IQ V +L T ++G+P T ++ GS++ + SE T+P ++ S
Sbjct: 140 AIRPVTDY-NEVTLHFIQCVRMHLENTKSQIGSPAKTYSAMGSSSSNGFSEMTTPTSVKS 198
Query: 352 S 354
+
Sbjct: 199 N 199
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 113 AVLTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPS 226
A T++SRR TT++S T +A + R+ + ++ APS
Sbjct: 8 AQTTEDSRRRATTSTSTPTCSAATSRSASRSSRPLAPS 45
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 487 GSSLPCGKQQECTSRSTTLKYNQY 558
G ++PCGK T++ L+YN+Y
Sbjct: 788 GVTVPCGKLVPSTNKDGPLEYNEY 811
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 396 LALKLGPTLDPANERLAYGDGKEKNS 473
+AL GP L P N A+G G E S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGS 171
>07_03_0829 -
21792924-21793247,21793332-21793482,21793577-21793811,
21793900-21794110,21794218-21794435,21794536-21794671,
21796732-21797517
Length = 686
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 467 EQRPHQLEVHYLVGNNKSVLQDPQH 541
E RPH V ++GN +V+ P+H
Sbjct: 627 EDRPHMAAVFMMLGNLSAVVPQPRH 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.124 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,394,249
Number of Sequences: 37544
Number of extensions: 316098
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -