Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20099
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 30   1.6  
SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)                      29   2.2  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   5.0  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)                      28   6.6  

>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 243 QPDHDGSRNTMEYCYKLWVGNG 308
           +P H  S +T++Y Y+LW G G
Sbjct: 753 RPRHPSSTSTVKYRYRLWTGKG 774


>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
          Length = 249

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 396 LALKLGPTLDPANERLAYGD 455
           +++KL P +DP   RLAYGD
Sbjct: 6   ISVKLPPDIDPTKARLAYGD 25


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = -3

Query: 587  LQSVVELSFKYWLYFSVVDLEVHS-----CCFPQGNELPTDEV 474
            + +V+ +S  +WL FS++ +++ +     C    GN LP DE+
Sbjct: 2133 IANVLLVSLLFWLIFSILGVQLFAGMFFKCLDIHGNRLPIDEI 2175


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 289 SCGSATDSTLSESTSPITLDSSWP 360
           S GS TDS  S STSP+ L  + P
Sbjct: 619 SAGSGTDSASSRSTSPLNLPYTSP 642


>SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)
          Length = 236

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 289 SCGSATDSTLSESTSPITLDSSWP 360
           S GS TDS  S STSP+ L  + P
Sbjct: 64  SAGSGTDSASSRSTSPLNLPYTSP 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,286
Number of Sequences: 59808
Number of extensions: 365077
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)